Analysis of interatomic Contacts of Structural Units in PDB entry:
8JNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JNX entry

There is 1 chain in PDB entry 8JNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1HIS 660
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8JNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 134Right-handed alpha
Helix 2
AA2
A
141 145Right-handed 310
Helix 3
AA3
A
149 153Right-handed 310
Helix 4
AA4
A
161 166Right-handed alpha
Helix 5
AA5
A
173 180Right-handed alpha
Helix 6
AA6
A
180 188Right-handed alpha
Helix 7
AA7
A
220 234Right-handed alpha
Helix 8
AA8
A
251 261Right-handed alpha
Helix 9
AA9
A
262 264Right-handed 310
Helix 10
AB1
A
294 304Right-handed alpha
Helix 11
AB2
A
304 311Right-handed alpha
Helix 12
AB3
A
327 342Right-handed alpha
Helix 13
AB4
A
354 359Right-handed alpha
Helix 14
AB5
A
360 362Right-handed 310
Helix 15
AB6
A
370 382Right-handed alpha
Helix 16
AB7
A
387 401Right-handed alpha
Helix 17
AB8
A
418 423Right-handed alpha
Helix 18
AB9
A
426 439Right-handed alpha
Helix 19
AC1
A
449 453Right-handed 310
Helix 20
AC2
A
466 470Right-handed 310
Helix 21
AC3
A
483 498Right-handed alpha
Helix 22
AC4
A
500 505Right-handed alpha
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There are 9 sheets in PDB entry 8JNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
19 27anti-parallel
Strand 3
A
71 80anti-parallel
Strand 4
A
56 68anti-parallel
Strand 5
A
33 39anti-parallel
Strand 6
A
87 96anti-parallel
Strand 7
A
104 105anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
19 27anti-parallel
Strand 3
A
71 80anti-parallel
Strand 4
A
56 68anti-parallel
Strand 5
A
33 39anti-parallel
Strand 6
A
87 96anti-parallel
Strand 7
A
119 123anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
51 54anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
191 194parallel
Strand 3
A
237 242parallel
Strand 4
A
317 320parallel
Strand 5
A
346 349parallel
Strand 6
A
367 369parallel
Strand 7
A
406 409parallel
Strand 8
A
443 447parallel
Strand 9
A
137 140parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
284 288anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 514first strand
Strand 2
A
517 522anti-parallel
Strand 3
A
529 534anti-parallel
Strand 4
A
569 574anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 549first strand
Strand 2
A
558 565anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 596first strand
Strand 2
A
585 588anti-parallel
Strand 3
A
622 625anti-parallel
Strand 4
A
629 630anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 599first strand
Strand 2
A
606 607anti-parallel
Strand 3
A
647 648anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il