Analysis of interatomic Contacts of Structural Units in PDB entry:
8JNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JNY entry

There are 2 chains in PDB entry 8JNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 229GLN 581
B
 GLY 229GLN 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8JNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
235 246Right-handed alpha
Helix 2
AA2
A
247 258Right-handed alpha
Helix 3
AA3
A
266 270Right-handed 310
Helix 4
AA4
A
271 292Right-handed alpha
Helix 5
AA5
A
295 309Right-handed alpha
Helix 6
AA6
A
323 349Right-handed alpha
Helix 7
AA7
A
356 366Right-handed alpha
Helix 8
AA8
A
376 389Right-handed alpha
Helix 9
AA9
A
431 433Right-handed 310
Helix 10
AB1
A
434 442Right-handed alpha
Helix 11
AB2
A
451 455Right-handed 310
Helix 12
AB3
A
466 472Right-handed alpha
Helix 13
AB4
A
473 475Right-handed 310
Helix 14
AB5
A
502 507Right-handed 310
Helix 15
AB6
A
524 526Right-handed 310
Helix 16
AB7
A
563 565Right-handed 310
Helix 17
AB8
B
235 246Right-handed alpha
Helix 18
AB9
B
247 257Right-handed alpha
Helix 19
AC1
B
271 292Right-handed alpha
Helix 20
AC2
B
297 309Right-handed alpha
Helix 21
AC3
B
323 349Right-handed alpha
Helix 22
AC4
B
356 365Right-handed alpha
Helix 23
AC5
B
376 389Right-handed alpha
Helix 24
AC6
B
431 433Right-handed 310
Helix 25
AC7
B
434 442Right-handed alpha
Helix 26
AC8
B
451 455Right-handed 310
Helix 27
AC9
B
466 472Right-handed alpha
Helix 28
AD1
B
473 475Right-handed 310
Helix 29
AD2
B
477 480Right-handed 310
Helix 30
AD3
B
504 509Right-handed 310
Helix 31
AD4
B
563 565Right-handed 310
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There are 7 sheets in PDB entry 8JNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 371first strand
Strand 2
A
397 409anti-parallel
Strand 3
A
567 579anti-parallel
Strand 4
A
482 490anti-parallel
Strand 5
A
424 429anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 463first strand
Strand 2
A
558 561anti-parallel
Strand 3
A
514 517anti-parallel
Strand 4
A
495 498parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 531first strand
Strand 2
A
534 537anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 371first strand
Strand 2
B
398 409anti-parallel
Strand 3
B
567 578anti-parallel
Strand 4
B
482 491anti-parallel
Strand 5
B
423 429anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 463first strand
Strand 2
B
558 561anti-parallel
Strand 3
B
515 517anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
521 522first strand
Strand 2
B
542 543anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 531first strand
Strand 2
B
534 536anti-parallel
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