Analysis of interatomic Contacts of Structural Units in PDB entry:
8JO0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JO0 entry

There are 13 chains in PDB entry 8JO0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	MET 1	PHE 110
I	MET 1	PHE 110
J	MET 1	PHE 110
K	MET 1	VAL 105
L	MET 1	VAL 105
M	MET 1	VAL 105
A	ARG 112	LEU 543
B	ARG 112	LEU 543
C	ARG 112	LEU 543
D	ARG 112	LEU 543
E	ARG 112	LEU 543
F	ARG 112	LEU 543
G	ARG 112	LEU 543

There are188 helices in PDB entry 8JO0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	3	13	Right-handed alpha
Helix 2	AA2	H	13	18	Right-handed alpha
Helix 3	AA3	H	22	33	Right-handed alpha
Helix 4	AA4	H	39	46	Right-handed alpha
Helix 5	AA5	H	49	65	Right-handed alpha
Helix 6	AA6	H	71	76	Right-handed alpha
Helix 7	AA7	H	80	96	Right-handed alpha
Helix 8	AA8	H	100	105	Right-handed alpha
Helix 9	AA9	H	106	110	Right-handed 310
Helix 10	AB1	I	3	13	Right-handed alpha
Helix 11	AB2	I	13	18	Right-handed alpha
Helix 12	AB3	I	22	33	Right-handed alpha
Helix 13	AB4	I	39	46	Right-handed alpha
Helix 14	AB5	I	49	65	Right-handed alpha
Helix 15	AB6	I	71	76	Right-handed alpha
Helix 16	AB7	I	80	96	Right-handed alpha
Helix 17	AB8	I	100	105	Right-handed alpha
Helix 18	AB9	I	106	110	Right-handed 310
Helix 19	AC1	J	3	13	Right-handed alpha
Helix 20	AC2	J	13	18	Right-handed alpha
Helix 21	AC3	J	22	33	Right-handed alpha
Helix 22	AC4	J	39	46	Right-handed alpha
Helix 23	AC5	J	49	65	Right-handed alpha
Helix 24	AC6	J	71	76	Right-handed alpha
Helix 25	AC7	J	80	96	Right-handed alpha
Helix 26	AC8	J	100	105	Right-handed alpha
Helix 27	AC9	J	106	110	Right-handed 310
Helix 28	AD1	K	3	13	Right-handed alpha
Helix 29	AD2	K	13	20	Right-handed alpha
Helix 30	AD3	K	22	33	Right-handed alpha
Helix 31	AD4	K	39	46	Right-handed alpha
Helix 32	AD5	K	49	65	Right-handed alpha
Helix 33	AD6	K	71	76	Right-handed alpha
Helix 34	AD7	K	80	96	Right-handed alpha
Helix 35	AD8	L	3	13	Right-handed alpha
Helix 36	AD9	L	13	20	Right-handed alpha
Helix 37	AE1	L	22	33	Right-handed alpha
Helix 38	AE2	L	39	46	Right-handed alpha
Helix 39	AE3	L	49	65	Right-handed alpha
Helix 40	AE4	L	71	76	Right-handed alpha
Helix 41	AE5	L	80	96	Right-handed alpha
Helix 42	AE6	M	3	13	Right-handed alpha
Helix 43	AE7	M	13	20	Right-handed alpha
Helix 44	AE8	M	22	33	Right-handed alpha
Helix 45	AE9	M	39	46	Right-handed alpha
Helix 46	AF1	M	49	65	Right-handed alpha
Helix 47	AF2	M	71	76	Right-handed alpha
Helix 48	AF3	M	80	96	Right-handed alpha
Helix 49	AF4	A	113	122	Right-handed alpha
Helix 50	AF5	A	133	146	Right-handed alpha
Helix 51	AF6	A	164	173	Right-handed alpha
Helix 52	AF7	A	198	212	Right-handed alpha
Helix 53	AF8	A	227	239	Right-handed alpha
Helix 54	AF9	A	254	264	Right-handed alpha
Helix 55	AG1	A	277	281	Right-handed 310
Helix 56	AG2	A	294	306	Right-handed alpha
Helix 57	AG3	A	312	327	Right-handed alpha
Helix 58	AG4	A	329	335	Right-handed alpha
Helix 59	AG5	A	344	364	Right-handed alpha
Helix 60	AG6	A	374	384	Right-handed alpha
Helix 61	AG7	A	386	397	Right-handed alpha
Helix 62	AG8	A	407	412	Right-handed alpha
Helix 63	AG9	A	428	439	Right-handed alpha
Helix 64	AH1	A	457	466	Right-handed alpha
Helix 65	AH2	A	469	486	Right-handed alpha
Helix 66	AH3	A	536	541	Right-handed alpha
Helix 67	AH4	B	113	122	Right-handed alpha
Helix 68	AH5	B	133	146	Right-handed alpha
Helix 69	AH6	B	164	175	Right-handed alpha
Helix 70	AH7	B	198	212	Right-handed alpha
Helix 71	AH8	B	227	239	Right-handed alpha
Helix 72	AH9	B	240	242	Right-handed 310
Helix 73	AI1	B	255	264	Right-handed alpha
Helix 74	AI2	B	294	306	Right-handed alpha
Helix 75	AI3	B	312	326	Right-handed alpha
Helix 76	AI4	B	329	339	Right-handed alpha
Helix 77	AI5	B	344	356	Right-handed alpha
Helix 78	AI6	B	358	364	Right-handed alpha
Helix 79	AI7	B	374	384	Right-handed alpha
Helix 80	AI8	B	386	396	Right-handed alpha
Helix 81	AI9	B	407	412	Right-handed alpha
Helix 82	AJ1	B	427	439	Right-handed alpha
Helix 83	AJ2	B	457	468	Right-handed alpha
Helix 84	AJ3	B	469	487	Right-handed alpha
Helix 85	AJ4	B	533	535	Right-handed 310
Helix 86	AJ5	B	536	542	Right-handed alpha
Helix 87	AJ6	C	113	122	Right-handed alpha
Helix 88	AJ7	C	133	146	Right-handed alpha
Helix 89	AJ8	C	164	173	Right-handed alpha
Helix 90	AJ9	C	198	212	Right-handed alpha
Helix 91	AK1	C	227	239	Right-handed alpha
Helix 92	AK2	C	240	242	Right-handed 310
Helix 93	AK3	C	254	264	Right-handed alpha
Helix 94	AK4	C	277	281	Right-handed 310
Helix 95	AK5	C	294	306	Right-handed alpha
Helix 96	AK6	C	312	326	Right-handed alpha
Helix 97	AK7	C	329	339	Right-handed alpha
Helix 98	AK8	C	344	364	Right-handed alpha
Helix 99	AK9	C	374	384	Right-handed alpha
Helix 100	AL1	C	386	397	Right-handed alpha
Helix 101	AL2	C	407	412	Right-handed alpha
Helix 102	AL3	C	428	439	Right-handed alpha
Helix 103	AL4	C	457	466	Right-handed alpha
Helix 104	AL5	C	469	485	Right-handed alpha
Helix 105	AL6	C	532	535	Right-handed 310
Helix 106	AL7	C	536	541	Right-handed alpha
Helix 107	AL8	D	113	122	Right-handed alpha
Helix 108	AL9	D	133	146	Right-handed alpha
Helix 109	AM1	D	164	173	Right-handed alpha
Helix 110	AM2	D	198	212	Right-handed alpha
Helix 111	AM3	D	222	226	Right-handed 310
Helix 112	AM4	D	227	239	Right-handed alpha
Helix 113	AM5	D	254	264	Right-handed alpha
Helix 114	AM6	D	294	306	Right-handed alpha
Helix 115	AM7	D	312	326	Right-handed alpha
Helix 116	AM8	D	329	338	Right-handed alpha
Helix 117	AM9	D	344	355	Right-handed alpha
Helix 118	AN1	D	358	364	Right-handed alpha
Helix 119	AN2	D	373	384	Right-handed alpha
Helix 120	AN3	D	386	395	Right-handed alpha
Helix 121	AN4	D	407	412	Right-handed alpha
Helix 122	AN5	D	424	427	Right-handed 310
Helix 123	AN6	D	428	439	Right-handed alpha
Helix 124	AN7	D	457	466	Right-handed alpha
Helix 125	AN8	D	469	486	Right-handed alpha
Helix 126	AN9	D	533	535	Right-handed 310
Helix 127	AO1	D	536	541	Right-handed alpha
Helix 128	AO2	E	113	122	Right-handed alpha
Helix 129	AO3	E	133	146	Right-handed alpha
Helix 130	AO4	E	164	176	Right-handed alpha
Helix 131	AO5	E	198	212	Right-handed alpha
Helix 132	AO6	E	227	239	Right-handed alpha
Helix 133	AO7	E	240	242	Right-handed 310
Helix 134	AO8	E	254	264	Right-handed alpha
Helix 135	AO9	E	277	281	Right-handed 310
Helix 136	AP1	E	294	306	Right-handed alpha
Helix 137	AP2	E	312	326	Right-handed alpha
Helix 138	AP3	E	329	335	Right-handed alpha
Helix 139	AP4	E	344	364	Right-handed alpha
Helix 140	AP5	E	373	384	Right-handed alpha
Helix 141	AP6	E	386	396	Right-handed alpha
Helix 142	AP7	E	407	412	Right-handed alpha
Helix 143	AP8	E	424	427	Right-handed 310
Helix 144	AP9	E	428	439	Right-handed alpha
Helix 145	AQ1	E	457	468	Right-handed alpha
Helix 146	AQ2	E	469	485	Right-handed alpha
Helix 147	AQ3	E	537	543	Right-handed alpha
Helix 148	AQ4	F	113	122	Right-handed alpha
Helix 149	AQ5	F	136	146	Right-handed alpha
Helix 150	AQ6	F	164	173	Right-handed alpha
Helix 151	AQ7	F	198	212	Right-handed alpha
Helix 152	AQ8	F	227	239	Right-handed alpha
Helix 153	AQ9	F	240	242	Right-handed 310
Helix 154	AR1	F	255	265	Right-handed alpha
Helix 155	AR2	F	274	281	Right-handed 310
Helix 156	AR3	F	294	305	Right-handed alpha
Helix 157	AR4	F	312	327	Right-handed alpha
Helix 158	AR5	F	330	340	Right-handed alpha
Helix 159	AR6	F	344	364	Right-handed alpha
Helix 160	AR7	F	374	384	Right-handed alpha
Helix 161	AR8	F	386	395	Right-handed alpha
Helix 162	AR9	F	407	412	Right-handed alpha
Helix 163	AS1	F	427	439	Right-handed alpha
Helix 164	AS2	F	457	468	Right-handed alpha
Helix 165	AS3	F	469	483	Right-handed alpha
Helix 166	AS4	F	536	543	Right-handed alpha
Helix 167	AS5	G	113	122	Right-handed alpha
Helix 168	AS6	G	133	146	Right-handed alpha
Helix 169	AS7	G	164	173	Right-handed alpha
Helix 170	AS8	G	198	212	Right-handed alpha
Helix 171	AS9	G	222	226	Right-handed 310
Helix 172	AT1	G	227	239	Right-handed alpha
Helix 173	AT2	G	255	264	Right-handed alpha
Helix 174	AT3	G	275	279	Right-handed 310
Helix 175	AT4	G	294	306	Right-handed alpha
Helix 176	AT5	G	312	327	Right-handed alpha
Helix 177	AT6	G	329	338	Right-handed alpha
Helix 178	AT7	G	344	356	Right-handed alpha
Helix 179	AT8	G	359	364	Right-handed alpha
Helix 180	AT9	G	373	384	Right-handed alpha
Helix 181	AU1	G	386	395	Right-handed alpha
Helix 182	AU2	G	407	412	Right-handed alpha
Helix 183	AU3	G	427	440	Right-handed alpha
Helix 184	AU4	G	441	443	Right-handed 310
Helix 185	AU5	G	457	468	Right-handed alpha
Helix 186	AU6	G	469	486	Right-handed alpha
Helix 187	AU7	G	533	535	Right-handed 310
Helix 188	AU8	G	536	541	Right-handed alpha

There are 14 sheets in PDB entry 8JO0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	246	252	parallel
Strand 3	A	267	272	parallel
Strand 4	A	154	159	parallel
Strand 5	A	285	290	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	453	455	anti-parallel
Strand 3	A	445	447	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	245	252	parallel
Strand 3	B	267	272	parallel
Strand 4	B	154	159	parallel
Strand 5	B	285	290	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	453	454	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	191	first strand
Strand 2	C	245	252	parallel
Strand 3	C	267	272	parallel
Strand 4	C	154	158	parallel
Strand 5	C	285	287	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	406	first strand
Strand 2	C	453	454	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	191	first strand
Strand 2	D	245	252	parallel
Strand 3	D	268	272	parallel
Strand 4	D	154	159	parallel
Strand 5	D	285	290	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	453	454	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	191	first strand
Strand 2	E	246	252	parallel
Strand 3	E	268	272	parallel
Strand 4	E	154	158	parallel
Strand 5	E	285	287	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	405	406	first strand
Strand 2	E	453	455	anti-parallel
Strand 3	E	445	447	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	191	first strand
Strand 2	F	245	252	parallel
Strand 3	F	268	272	parallel
Strand 4	F	153	156	parallel
Strand 5	F	284	287	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	406	first strand
Strand 2	F	453	455	anti-parallel
Strand 3	F	445	447	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	187	191	first strand
Strand 2	G	246	252	parallel
Strand 3	G	268	272	parallel
Strand 4	G	154	156	parallel
Strand 5	G	285	287	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	405	406	first strand
Strand 2	G	453	454	anti-parallel
Strand 3	G	446	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JO0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JO0