Analysis of interatomic Contacts of Structural Units in PDB entry:
8JO3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JO3 entry

There are 2 chains in PDB entry 8JO3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3SER 352
B
 THR 7PHE 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8JO3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
20 37Right-handed alpha
Helix 3
AA3
A
41 55Right-handed alpha
Helix 4
AA4
A
57 72Right-handed alpha
Helix 5
AA5
A
72 77Right-handed alpha
Helix 6
AA6
A
77 91Right-handed alpha
Helix 7
AA7
A
98 118Right-handed alpha
Helix 8
AA8
A
121 134Right-handed alpha
Helix 9
AA9
A
149 160Right-handed alpha
Helix 10
AB1
A
161 164Right-handed 310
Helix 11
AB2
A
168 175Right-handed alpha
Helix 12
AB3
A
177 181Right-handed 310
Helix 13
AB4
A
228 233Right-handed alpha
Helix 14
AB5
A
244 260Right-handed alpha
Helix 15
AB6
A
265 284Right-handed alpha
Helix 16
AB7
A
288 297Right-handed alpha
Helix 17
AB8
A
298 308Right-handed alpha
Helix 18
AB9
A
320 352Right-handed alpha
Helix 19
AC1
B
57 63Right-handed alpha
Helix 20
AC2
B
80 94Right-handed alpha
Helix 21
AC3
B
99 103Right-handed 310
Helix 22
AC4
B
114 128Right-handed alpha
Helix 23
AC5
B
139 147Right-handed alpha
Helix 24
AC6
B
183 198Right-handed alpha
Helix 25
AC7
B
204 219Right-handed alpha
Helix 26
AC8
B
224 235Right-handed alpha
Helix 27
AC9
B
254 262Right-handed alpha
Helix 28
AD1
B
263 264Right-handed 310
Helix 29
AD2
B
265 270Right-handed 310
Helix 30
AD3
B
275 286Right-handed alpha
Helix 31
AD4
B
288 298Right-handed alpha
Helix 32
AD5
B
303 307Right-handed 310
Helix 33
AD6
B
310 323Right-handed alpha
Helix 34
AD7
B
336 338Right-handed 310
Helix 35
AD8
B
339 350Right-handed alpha
Helix 36
AD9
B
352 357Right-handed 310
Helix 37
AE1
B
361 368Right-handed alpha
Helix 38
AE2
B
370 376Right-handed alpha
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There are 7 sheets in PDB entry 8JO3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
214 217anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
18 23anti-parallel
Strand 3
B
10 14anti-parallel
Strand 4
B
105 109parallel
Strand 5
B
133 138parallel
Strand 6
B
359 360anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
37 39anti-parallel
Strand 3
B
68 70anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
77 78anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
162 168anti-parallel
Strand 3
B
178 180anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
162 168anti-parallel
Strand 3
B
152 156anti-parallel
Strand 4
B
299 302parallel
Strand 5
B
331 332parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
249 252anti-parallel
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