Analysis of interatomic Contacts of Structural Units in PDB entry:
8JON

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JON entry

There are 6 chains in PDB entry 8JON (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 19	VAL 503
B	LEU 19	VAL 503
C	LEU 19	VAL 503
D	LEU 19	VAL 503
E	LEU 19	VAL 503
F	LEU 19	VAL 503

There are120 helices in PDB entry 8JON. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	36	Right-handed alpha
Helix 2	AA2	A	55	72	Right-handed alpha
Helix 3	AA3	A	83	92	Right-handed alpha
Helix 4	AA4	A	93	95	Right-handed 310
Helix 5	AA5	A	97	104	Right-handed alpha
Helix 6	AA6	A	126	142	Right-handed alpha
Helix 7	AA7	A	150	156	Right-handed alpha
Helix 8	AA8	A	160	179	Right-handed alpha
Helix 9	AA9	A	200	205	Right-handed alpha
Helix 10	AB1	A	252	256	Right-handed 310
Helix 11	AB2	A	271	278	Right-handed alpha
Helix 12	AB3	A	297	312	Right-handed alpha
Helix 13	AB4	A	324	335	Right-handed alpha
Helix 14	AB5	A	338	345	Right-handed alpha
Helix 15	AB6	A	354	358	Right-handed 310
Helix 16	AB7	A	359	375	Right-handed alpha
Helix 17	AB8	A	383	388	Right-handed alpha
Helix 18	AB9	A	392	410	Right-handed alpha
Helix 19	AC1	A	433	437	Right-handed 310
Helix 20	AC2	A	492	496	Right-handed 310
Helix 21	AC3	B	31	36	Right-handed alpha
Helix 22	AC4	B	55	72	Right-handed alpha
Helix 23	AC5	B	83	92	Right-handed alpha
Helix 24	AC6	B	93	95	Right-handed 310
Helix 25	AC7	B	97	104	Right-handed alpha
Helix 26	AC8	B	126	142	Right-handed alpha
Helix 27	AC9	B	150	156	Right-handed alpha
Helix 28	AD1	B	160	179	Right-handed alpha
Helix 29	AD2	B	200	205	Right-handed alpha
Helix 30	AD3	B	252	256	Right-handed 310
Helix 31	AD4	B	271	278	Right-handed alpha
Helix 32	AD5	B	297	312	Right-handed alpha
Helix 33	AD6	B	324	335	Right-handed alpha
Helix 34	AD7	B	338	345	Right-handed alpha
Helix 35	AD8	B	354	358	Right-handed 310
Helix 36	AD9	B	359	375	Right-handed alpha
Helix 37	AE1	B	383	388	Right-handed alpha
Helix 38	AE2	B	392	410	Right-handed alpha
Helix 39	AE3	B	433	437	Right-handed 310
Helix 40	AE4	B	492	496	Right-handed 310
Helix 41	AE5	C	31	36	Right-handed alpha
Helix 42	AE6	C	55	72	Right-handed alpha
Helix 43	AE7	C	83	92	Right-handed alpha
Helix 44	AE8	C	93	95	Right-handed 310
Helix 45	AE9	C	97	104	Right-handed alpha
Helix 46	AF1	C	126	142	Right-handed alpha
Helix 47	AF2	C	150	156	Right-handed alpha
Helix 48	AF3	C	160	179	Right-handed alpha
Helix 49	AF4	C	200	205	Right-handed alpha
Helix 50	AF5	C	252	256	Right-handed 310
Helix 51	AF6	C	271	278	Right-handed alpha
Helix 52	AF7	C	297	312	Right-handed alpha
Helix 53	AF8	C	324	335	Right-handed alpha
Helix 54	AF9	C	338	345	Right-handed alpha
Helix 55	AG1	C	354	358	Right-handed 310
Helix 56	AG2	C	359	375	Right-handed alpha
Helix 57	AG3	C	383	388	Right-handed alpha
Helix 58	AG4	C	392	410	Right-handed alpha
Helix 59	AG5	C	433	437	Right-handed 310
Helix 60	AG6	C	492	496	Right-handed 310
Helix 61	AG7	D	31	36	Right-handed alpha
Helix 62	AG8	D	55	72	Right-handed alpha
Helix 63	AG9	D	83	92	Right-handed alpha
Helix 64	AH1	D	93	95	Right-handed 310
Helix 65	AH2	D	97	104	Right-handed alpha
Helix 66	AH3	D	126	142	Right-handed alpha
Helix 67	AH4	D	150	156	Right-handed alpha
Helix 68	AH5	D	160	179	Right-handed alpha
Helix 69	AH6	D	200	205	Right-handed alpha
Helix 70	AH7	D	252	256	Right-handed 310
Helix 71	AH8	D	271	278	Right-handed alpha
Helix 72	AH9	D	297	312	Right-handed alpha
Helix 73	AI1	D	324	335	Right-handed alpha
Helix 74	AI2	D	338	345	Right-handed alpha
Helix 75	AI3	D	354	358	Right-handed 310
Helix 76	AI4	D	359	375	Right-handed alpha
Helix 77	AI5	D	383	388	Right-handed alpha
Helix 78	AI6	D	392	410	Right-handed alpha
Helix 79	AI7	D	433	437	Right-handed 310
Helix 80	AI8	D	492	496	Right-handed 310
Helix 81	AI9	E	31	36	Right-handed alpha
Helix 82	AJ1	E	55	72	Right-handed alpha
Helix 83	AJ2	E	83	92	Right-handed alpha
Helix 84	AJ3	E	93	95	Right-handed 310
Helix 85	AJ4	E	97	104	Right-handed alpha
Helix 86	AJ5	E	126	142	Right-handed alpha
Helix 87	AJ6	E	150	156	Right-handed alpha
Helix 88	AJ7	E	160	179	Right-handed alpha
Helix 89	AJ8	E	200	205	Right-handed alpha
Helix 90	AJ9	E	252	256	Right-handed 310
Helix 91	AK1	E	271	278	Right-handed alpha
Helix 92	AK2	E	297	312	Right-handed alpha
Helix 93	AK3	E	324	335	Right-handed alpha
Helix 94	AK4	E	338	345	Right-handed alpha
Helix 95	AK5	E	354	358	Right-handed 310
Helix 96	AK6	E	359	375	Right-handed alpha
Helix 97	AK7	E	383	388	Right-handed alpha
Helix 98	AK8	E	392	410	Right-handed alpha
Helix 99	AK9	E	433	437	Right-handed 310
Helix 100	AL1	E	492	496	Right-handed 310
Helix 101	AL2	F	31	36	Right-handed alpha
Helix 102	AL3	F	55	72	Right-handed alpha
Helix 103	AL4	F	83	92	Right-handed alpha
Helix 104	AL5	F	93	95	Right-handed 310
Helix 105	AL6	F	97	104	Right-handed alpha
Helix 106	AL7	F	126	142	Right-handed alpha
Helix 107	AL8	F	150	156	Right-handed alpha
Helix 108	AL9	F	160	179	Right-handed alpha
Helix 109	AM1	F	200	205	Right-handed alpha
Helix 110	AM2	F	252	256	Right-handed 310
Helix 111	AM3	F	271	278	Right-handed alpha
Helix 112	AM4	F	297	312	Right-handed alpha
Helix 113	AM5	F	324	335	Right-handed alpha
Helix 114	AM6	F	338	345	Right-handed alpha
Helix 115	AM7	F	354	358	Right-handed 310
Helix 116	AM8	F	359	375	Right-handed alpha
Helix 117	AM9	F	383	388	Right-handed alpha
Helix 118	AN1	F	392	410	Right-handed alpha
Helix 119	AN2	F	433	437	Right-handed 310
Helix 120	AN3	F	492	496	Right-handed 310

There are 30 sheets in PDB entry 8JON. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	40	41	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	111	first strand
Strand 2	A	75	79	parallel
Strand 3	A	145	149	parallel
Strand 4	A	181	187	parallel
Strand 5	A	45	50	parallel
Strand 6	A	207	216	parallel
Strand 7	A	219	229	anti-parallel
Strand 8	A	238	244	anti-parallel
Strand 9	A	247	250	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	282	283	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	316	320	parallel
Strand 3	A	378	381	parallel
Strand 4	A	413	419	parallel
Strand 5	A	287	292	parallel
Strand 6	A	440	449	parallel
Strand 7	A	452	462	anti-parallel
Strand 8	A	472	477	anti-parallel
Strand 9	A	480	486	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	499	500	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	B	40	41	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	111	first strand
Strand 2	B	75	79	parallel
Strand 3	B	145	149	parallel
Strand 4	B	181	187	parallel
Strand 5	B	45	50	parallel
Strand 6	B	207	216	parallel
Strand 7	B	219	229	anti-parallel
Strand 8	B	238	244	anti-parallel
Strand 9	B	247	250	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	282	283	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	316	320	parallel
Strand 3	B	378	381	parallel
Strand 4	B	413	419	parallel
Strand 5	B	287	292	parallel
Strand 6	B	440	449	parallel
Strand 7	B	452	462	anti-parallel
Strand 8	B	472	477	anti-parallel
Strand 9	B	480	486	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	499	500	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	C	40	41	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	111	first strand
Strand 2	C	75	79	parallel
Strand 3	C	145	149	parallel
Strand 4	C	181	187	parallel
Strand 5	C	45	50	parallel
Strand 6	C	207	216	parallel
Strand 7	C	219	229	anti-parallel
Strand 8	C	238	244	anti-parallel
Strand 9	C	247	250	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	282	283	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	352	first strand
Strand 2	C	316	320	parallel
Strand 3	C	378	381	parallel
Strand 4	C	413	419	parallel
Strand 5	C	287	292	parallel
Strand 6	C	440	449	parallel
Strand 7	C	452	462	anti-parallel
Strand 8	C	472	477	anti-parallel
Strand 9	C	480	486	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	491	first strand
Strand 2	C	499	500	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	25	first strand
Strand 2	D	40	41	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	111	first strand
Strand 2	D	75	79	parallel
Strand 3	D	145	149	parallel
Strand 4	D	181	187	parallel
Strand 5	D	45	50	parallel
Strand 6	D	207	216	parallel
Strand 7	D	219	229	anti-parallel
Strand 8	D	238	244	anti-parallel
Strand 9	D	247	250	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	282	283	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	352	first strand
Strand 2	D	316	320	parallel
Strand 3	D	378	381	parallel
Strand 4	D	413	419	parallel
Strand 5	D	287	292	parallel
Strand 6	D	440	449	parallel
Strand 7	D	452	462	anti-parallel
Strand 8	D	472	477	anti-parallel
Strand 9	D	480	486	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	491	first strand
Strand 2	D	499	500	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	25	first strand
Strand 2	E	40	41	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	111	first strand
Strand 2	E	75	79	parallel
Strand 3	E	145	149	parallel
Strand 4	E	181	187	parallel
Strand 5	E	45	50	parallel
Strand 6	E	207	216	parallel
Strand 7	E	219	229	anti-parallel
Strand 8	E	238	244	anti-parallel
Strand 9	E	247	250	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	267	first strand
Strand 2	E	282	283	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	348	352	first strand
Strand 2	E	316	320	parallel
Strand 3	E	378	381	parallel
Strand 4	E	413	419	parallel
Strand 5	E	287	292	parallel
Strand 6	E	440	449	parallel
Strand 7	E	452	462	anti-parallel
Strand 8	E	472	477	anti-parallel
Strand 9	E	480	486	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	490	491	first strand
Strand 2	E	499	500	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	25	first strand
Strand 2	F	40	41	anti-parallel

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There are 9 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	111	first strand
Strand 2	F	75	79	parallel
Strand 3	F	145	149	parallel
Strand 4	F	181	187	parallel
Strand 5	F	45	50	parallel
Strand 6	F	207	216	parallel
Strand 7	F	219	229	anti-parallel
Strand 8	F	238	244	anti-parallel
Strand 9	F	247	250	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	267	first strand
Strand 2	F	282	283	anti-parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	352	first strand
Strand 2	F	316	320	parallel
Strand 3	F	378	381	parallel
Strand 4	F	413	419	parallel
Strand 5	F	287	292	parallel
Strand 6	F	440	449	parallel
Strand 7	F	452	462	anti-parallel
Strand 8	F	472	477	anti-parallel
Strand 9	F	480	486	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	490	491	first strand
Strand 2	F	499	500	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JON

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JON