Analysis of interatomic Contacts of Structural Units in PDB entry:
8JOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JOO entry

There are 2 chains in PDB entry 8JOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 19TRP 408
B
 LEU 19GLN 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8JOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 40Right-handed alpha
Helix 2
AA2
A
59 69Right-handed alpha
Helix 3
AA3
A
94 98Right-handed 310
Helix 4
AA4
A
101 112Right-handed alpha
Helix 5
AA5
A
115 120Right-handed alpha
Helix 6
AA6
A
122 141Right-handed alpha
Helix 7
AA7
A
146 150Right-handed alpha
Helix 8
AA8
A
152 164Right-handed alpha
Helix 9
AA9
A
166 168Right-handed 310
Helix 10
AB1
A
169 182Right-handed alpha
Helix 11
AB2
A
186 210Right-handed alpha
Helix 12
AB3
A
215 226Right-handed alpha
Helix 13
AB4
A
231 246Right-handed alpha
Helix 14
AB5
A
247 263Right-handed alpha
Helix 15
AB6
A
268 274Right-handed alpha
Helix 16
AB7
A
277 289Right-handed alpha
Helix 17
AB8
A
321 326Right-handed alpha
Helix 18
AB9
A
352 356Right-handed 310
Helix 19
AC1
A
359 378Right-handed alpha
Helix 20
AC2
A
386 390Right-handed 310
Helix 21
AC3
B
33 40Right-handed alpha
Helix 22
AC4
B
59 69Right-handed alpha
Helix 23
AC5
B
94 98Right-handed 310
Helix 24
AC6
B
101 112Right-handed alpha
Helix 25
AC7
B
115 120Right-handed alpha
Helix 26
AC8
B
122 141Right-handed alpha
Helix 27
AC9
B
146 150Right-handed alpha
Helix 28
AD1
B
152 164Right-handed alpha
Helix 29
AD2
B
166 168Right-handed 310
Helix 30
AD3
B
169 182Right-handed alpha
Helix 31
AD4
B
186 210Right-handed alpha
Helix 32
AD5
B
215 226Right-handed alpha
Helix 33
AD6
B
231 246Right-handed alpha
Helix 34
AD7
B
247 263Right-handed alpha
Helix 35
AD8
B
268 274Right-handed alpha
Helix 36
AD9
B
277 289Right-handed alpha
Helix 37
AE1
B
321 326Right-handed alpha
Helix 38
AE2
B
352 356Right-handed 310
Helix 39
AE3
B
359 378Right-handed alpha
Helix 40
AE4
B
386 390Right-handed 310
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There are 6 sheets in PDB entry 8JOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
44 47parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
317 320parallel
Strand 5
A
299 301anti-parallel
Strand 6
A
72 73anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
405 407anti-parallel
Strand 3
A
382 383anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
310 312anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
44 47parallel
Strand 3
B
54 57anti-parallel
Strand 4
B
317 320parallel
Strand 5
B
299 301anti-parallel
Strand 6
B
72 73anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
405 407anti-parallel
Strand 3
B
382 383anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 307first strand
Strand 2
B
310 312anti-parallel
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