Analysis of interatomic Contacts of Structural Units in PDB entry:
8JOS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JOS entry

There is 1 chain in PDB entry 8JOS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 549
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8JOS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 7Right-handed alpha
Helix 2
AA2
A
21 33Right-handed alpha
Helix 3
AA3
A
50 69Right-handed alpha
Helix 4
AA4
A
70 72Right-handed 310
Helix 5
AA5
A
97 108Right-handed alpha
Helix 6
AA6
A
117 127Right-handed alpha
Helix 7
AA7
A
163 178Right-handed alpha
Helix 8
AA8
A
178 188Right-handed alpha
Helix 9
AA9
A
190 199Right-handed alpha
Helix 10
AB1
A
203 208Right-handed alpha
Helix 11
AB2
A
209 211Right-handed 310
Helix 12
AB3
A
214 224Right-handed alpha
Helix 13
AB4
A
226 244Right-handed alpha
Helix 14
AB5
A
283 297Right-handed alpha
Helix 15
AB6
A
300 318Right-handed alpha
Helix 16
AB7
A
339 341Right-handed 310
Helix 17
AB8
A
343 348Right-handed 310
Helix 18
AB9
A
365 370Right-handed alpha
Helix 19
AC1
A
379 398Right-handed alpha
Helix 20
AC2
A
400 405Right-handed 310
Helix 21
AC3
A
406 428Right-handed alpha
Helix 22
AC4
A
431 438Right-handed alpha
Helix 23
AC5
A
518 544Right-handed alpha
Helix 24
AC6
A
545 549Right-handed 310
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There are 7 sheets in PDB entry 8JOS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
14 18anti-parallel
Strand 3
A
89 93anti-parallel
Strand 4
A
74 75anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
137 142parallel
Strand 3
A
151 156anti-parallel
Strand 4
A
39 47anti-parallel
Strand 5
A
479 488anti-parallel
Strand 6
A
459 461anti-parallel
Strand 7
A
464 466anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
85 86anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
443 444anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
271 272anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 282first strand
Strand 2
A
505 513anti-parallel
Strand 3
A
496 502anti-parallel
Strand 4
A
448 450parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 337first strand
Strand 2
A
357 364anti-parallel
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