Analysis of interatomic Contacts of Structural Units in PDB entry:
8JOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JOT entry

There is 1 chain in PDB entry 8JOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 543ALA 914
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8JOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
565 569Right-handed 310
Helix 2
AA2
A
572 576Right-handed 310
Helix 3
AA3
A
578 580Right-handed 310
Helix 4
AA4
A
623 641Right-handed alpha
Helix 5
AA5
A
670 684Right-handed alpha
Helix 6
AA6
A
751 772Right-handed alpha
Helix 7
AA7
A
780 782Right-handed 310
Helix 8
AA8
A
788 790Right-handed 310
Helix 9
AA9
A
797 801Right-handed 310
Helix 10
AB1
A
802 806Right-handed 310
Helix 11
AB2
A
818 822Right-handed 310
Helix 12
AB3
A
823 830Right-handed alpha
Helix 13
AB4
A
833 850Right-handed alpha
Helix 14
AB5
A
862 871Right-handed alpha
Helix 15
AB6
A
882 893Right-handed alpha
Helix 16
AB7
A
896 900Right-handed 310
Helix 17
AB8
A
902 914Right-handed alpha
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There are 4 sheets in PDB entry 8JOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 552first strand
Strand 2
A
774 775anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 590first strand
Strand 2
A
594 604anti-parallel
Strand 3
A
609 618anti-parallel
Strand 4
A
660 664anti-parallel
Strand 5
A
649 653anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
784 786first strand
Strand 2
A
792 794anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
810 811first strand
Strand 2
A
816 817anti-parallel
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