Analysis of interatomic Contacts of Structural Units in PDB entry:
8JOU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JOU entry

There are 14 chains in PDB entry 8JOU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	ALA 3	GLN 138
b	ALA 3	GLN 138
c	ALA 3	GLN 138
d	ALA 3	GLN 138
e	ALA 3	GLN 138
f	ALA 3	GLN 138
g	ALA 3	GLN 138
h	ALA 3	GLN 138
i	ALA 3	GLN 138
j	ALA 3	GLN 138
A	UNK 1	UNK 118
D	GLY 3	ARG 91
B	GLY 3	ARG 91
C	GLY 3	ARG 91

There are 12 helices in PDB entry 8JOU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	5	17	Right-handed alpha
Helix 2	AA2	b	5	17	Right-handed alpha
Helix 3	AA3	c	5	17	Right-handed alpha
Helix 4	AA4	d	5	17	Right-handed alpha
Helix 5	AA5	e	5	17	Right-handed alpha
Helix 6	AA6	f	5	17	Right-handed alpha
Helix 7	AA7	g	5	18	Right-handed alpha
Helix 8	AA8	h	5	17	Right-handed alpha
Helix 9	AA9	i	5	17	Right-handed alpha
Helix 10	AB1	j	5	17	Right-handed alpha
Helix 11	AB2	D	38	40	Right-handed 310
Helix 12	AB3	B	20	23	Right-handed 310

There are 32 sheets in PDB entry 8JOU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	29	33	first strand
Strand 2	a	98	102	anti-parallel
Strand 3	a	110	115	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	83	84	first strand
Strand 2	a	129	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	94	95	first strand
Strand 2	a	121	122	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	136	137	first strand
Strand 2	A	27	28	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	29	33	first strand
Strand 2	b	94	102	anti-parallel
Strand 3	b	110	122	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	29	33	first strand
Strand 2	c	94	102	anti-parallel
Strand 3	c	110	122	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	83	84	first strand
Strand 2	c	129	130	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	136	137	first strand
Strand 2	A	49	50	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	57	58	first strand
Strand 2	d	29	33	anti-parallel
Strand 3	d	94	102	anti-parallel
Strand 4	d	110	122	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	83	84	first strand
Strand 2	d	129	130	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	29	33	first strand
Strand 2	e	94	102	anti-parallel
Strand 3	e	112	122	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	83	84	first strand
Strand 2	e	129	130	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	136	137	first strand
Strand 2	A	71	72	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	29	33	first strand
Strand 2	f	98	102	anti-parallel
Strand 3	f	110	115	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	83	84	first strand
Strand 2	f	129	130	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	94	95	first strand
Strand 2	f	121	122	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	57	58	first strand
Strand 2	g	29	30	anti-parallel
Strand 3	g	94	102	anti-parallel
Strand 4	g	113	122	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	83	84	first strand
Strand 2	g	129	130	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	29	33	first strand
Strand 2	h	94	102	anti-parallel
Strand 3	h	113	122	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	83	84	first strand
Strand 2	h	129	130	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	29	33	first strand
Strand 2	i	94	102	anti-parallel
Strand 3	i	110	122	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	83	84	first strand
Strand 2	i	129	130	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	136	137	first strand
Strand 2	A	111	112	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	29	33	first strand
Strand 2	j	94	102	anti-parallel
Strand 3	j	110	122	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	83	84	first strand
Strand 2	j	129	130	anti-parallel
Strand 3	A	100	101	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	136	138	first strand
Strand 2	A	104	106	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	D	16	18	anti-parallel
Strand 3	D	54	57	anti-parallel
Strand 4	D	48	50	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	82	90	parallel
Strand 3	D	67	76	anti-parallel
Strand 4	D	29	36	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	82	90	parallel
Strand 3	B	67	76	anti-parallel
Strand 4	B	29	36	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	54	57	anti-parallel
Strand 3	B	48	51	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	81	90	parallel
Strand 3	C	67	76	anti-parallel
Strand 4	C	29	36	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	54	57	anti-parallel
Strand 3	C	48	51	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JOU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JOU