Analysis of interatomic Contacts of Structural Units in PDB entry:
8JOZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JOZ entry

There are 9 chains in PDB entry 8JOZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 257
B
 G 1 G 7
B
 G 9 C 16
B
 G 19 G 19
B
 G 20 U 31
B
 U 33 U 33
B
 G 35 A 36
B
 A 38 G 53
B
 C 56 A 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 8JOZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 8Right-handed 310
Helix 2
AA2
A
9 17Right-handed alpha
Helix 3
AA3
A
20 41Right-handed alpha
Helix 4
AA4
A
56 65Right-handed alpha
Helix 5
AA5
A
75 88Right-handed alpha
Helix 6
AA6
A
89 90Right-handed 310
Helix 7
AA7
A
91 93Right-handed 310
Helix 8
AA8
A
101 109Right-handed 310
Helix 9
AA9
A
121 125Right-handed 310
Helix 10
AB1
A
127 138Right-handed alpha
Helix 11
AB2
A
151 163Right-handed alpha
Helix 12
AB3
A
164 170Right-handed alpha
Helix 13
AB4
A
187 198Right-handed alpha
Helix 14
AB5
A
211 215Right-handed 310
Helix 15
AB6
A
219 224Right-handed alpha
Helix 16
AB7
A
224 236Right-handed alpha
Helix 17
AB8
A
240 245Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 8JOZ.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
68 72parallel
Strand 3
A
47 51parallel
Strand 4
A
113 119parallel
Strand 5
A
139 150parallel
Strand 6
A
247 253anti-parallel
Strand 7
A
201 208anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il