Analysis of interatomic Contacts of Structural Units in PDB entry:
8JP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JP0 entry

There is 1 chain in PDB entry 8JP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 51PHE 937
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 8JP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 104Right-handed alpha
Helix 2
AA2
A
134 139Right-handed alpha
Helix 3
AA3
A
142 145Right-handed 310
Helix 4
AA4
A
146 159Right-handed alpha
Helix 5
AA5
A
167 188Right-handed alpha
Helix 6
AA6
A
200 224Right-handed alpha
Helix 7
AA7
A
235 259Right-handed alpha
Helix 8
AA8
A
655 665Right-handed alpha
Helix 9
AA9
A
683 697Right-handed alpha
Helix 10
AB1
A
713 720Right-handed alpha
Helix 11
AB2
A
737 744Right-handed alpha
Helix 12
AB3
A
746 756Right-handed alpha
Helix 13
AB4
A
764 769Right-handed alpha
Helix 14
AB5
A
770 790Right-handed alpha
Helix 15
AB6
A
796 804Right-handed alpha
Helix 16
AB7
A
804 810Right-handed alpha
Helix 17
AB8
A
810 824Right-handed alpha
Helix 18
AB9
A
828 860Right-handed alpha
Helix 19
AC1
A
871 890Right-handed alpha
Helix 20
AC2
A
893 897Right-handed 310
Helix 21
AC3
A
904 932Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8JP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 116first strand
Strand 2
A
122 129anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 268first strand
Strand 2
A
275 280anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 478first strand
Strand 2
A
424 432anti-parallel
Strand 3
A
407 411anti-parallel
Strand 4
A
519 521parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 419first strand
Strand 2
A
526 532parallel
Strand 3
A
489 501anti-parallel
Strand 4
A
439 447anti-parallel
Strand 5
A
461 466anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 609first strand
Strand 2
A
555 563anti-parallel
Strand 3
A
539 542anti-parallel
Strand 4
A
669 670parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 550first strand
Strand 2
A
675 681parallel
Strand 3
A
620 625anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 597first strand
Strand 2
A
569 574anti-parallel
Strand 3
A
630 632anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il