Analysis of interatomic Contacts of Structural Units in PDB entry:
8JP4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JP4 entry

There are 8 chains in PDB entry 8JP4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 42	THR 367
B	PRO 42	SER 365
C	GLY 40	SER 144
D	GLY 40	SER 144
E	PRO 42	THR 367
F	PRO 42	SER 365
G	GLY 40	SER 144
H	GLY 40	SER 144

There are 34 helices in PDB entry 8JP4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	177	181	Right-handed 310
Helix 2	AA2	A	282	309	Right-handed alpha
Helix 3	AA3	A	325	367	Right-handed alpha
Helix 4	AA4	B	282	311	Right-handed alpha
Helix 5	AA5	B	327	365	Right-handed alpha
Helix 6	AA6	C	42	48	Right-handed alpha
Helix 7	AA7	C	48	57	Right-handed alpha
Helix 8	AA8	C	68	80	Right-handed alpha
Helix 9	AA9	C	89	98	Right-handed alpha
Helix 10	AB1	C	113	129	Right-handed alpha
Helix 11	AB2	C	137	144	Right-handed alpha
Helix 12	AB3	D	42	47	Right-handed alpha
Helix 13	AB4	D	48	57	Right-handed alpha
Helix 14	AB5	D	68	80	Right-handed alpha
Helix 15	AB6	D	89	98	Right-handed alpha
Helix 16	AB7	D	113	129	Right-handed alpha
Helix 17	AB8	D	137	143	Right-handed alpha
Helix 18	AB9	E	177	181	Right-handed 310
Helix 19	AC1	E	282	309	Right-handed alpha
Helix 20	AC2	E	325	367	Right-handed alpha
Helix 21	AC3	F	282	311	Right-handed alpha
Helix 22	AC4	F	327	365	Right-handed alpha
Helix 23	AC5	G	42	48	Right-handed alpha
Helix 24	AC6	G	48	57	Right-handed alpha
Helix 25	AC7	G	68	80	Right-handed alpha
Helix 26	AC8	G	89	98	Right-handed alpha
Helix 27	AC9	G	113	129	Right-handed alpha
Helix 28	AD1	G	137	144	Right-handed alpha
Helix 29	AD2	H	42	47	Right-handed alpha
Helix 30	AD3	H	48	57	Right-handed alpha
Helix 31	AD4	H	68	80	Right-handed alpha
Helix 32	AD5	H	89	98	Right-handed alpha
Helix 33	AD6	H	113	129	Right-handed alpha
Helix 34	AD7	H	137	143	Right-handed alpha

There are 12 sheets in PDB entry 8JP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	52	first strand
Strand 2	A	256	268	anti-parallel
Strand 3	A	80	83	anti-parallel
Strand 4	A	74	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	52	first strand
Strand 2	A	256	268	anti-parallel
Strand 3	A	104	113	anti-parallel
Strand 4	A	201	208	anti-parallel
Strand 5	A	211	217	anti-parallel
Strand 6	A	228	234	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	243	249	anti-parallel
Strand 4	A	122	128	anti-parallel
Strand 5	A	145	152	anti-parallel
Strand 6	A	164	171	anti-parallel
Strand 7	A	188	190	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	53	first strand
Strand 2	B	256	268	anti-parallel
Strand 3	B	80	83	anti-parallel
Strand 4	B	74	75	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	53	first strand
Strand 2	B	256	268	anti-parallel
Strand 3	B	104	113	anti-parallel
Strand 4	B	201	208	anti-parallel
Strand 5	B	211	217	anti-parallel
Strand 6	B	228	234	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	89	95	anti-parallel
Strand 3	B	243	250	anti-parallel
Strand 4	B	122	128	anti-parallel
Strand 5	B	145	152	anti-parallel
Strand 6	B	164	171	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	52	first strand
Strand 2	E	256	268	anti-parallel
Strand 3	E	80	83	anti-parallel
Strand 4	E	74	75	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	52	first strand
Strand 2	E	256	268	anti-parallel
Strand 3	E	104	113	anti-parallel
Strand 4	E	201	208	anti-parallel
Strand 5	E	211	217	anti-parallel
Strand 6	E	228	234	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	90	95	anti-parallel
Strand 3	E	243	249	anti-parallel
Strand 4	E	122	128	anti-parallel
Strand 5	E	145	152	anti-parallel
Strand 6	E	164	171	anti-parallel
Strand 7	E	188	190	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	53	first strand
Strand 2	F	256	268	anti-parallel
Strand 3	F	80	83	anti-parallel
Strand 4	F	74	75	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	53	first strand
Strand 2	F	256	268	anti-parallel
Strand 3	F	104	113	anti-parallel
Strand 4	F	201	208	anti-parallel
Strand 5	F	211	217	anti-parallel
Strand 6	F	228	234	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	89	95	anti-parallel
Strand 3	F	243	250	anti-parallel
Strand 4	F	122	128	anti-parallel
Strand 5	F	145	152	anti-parallel
Strand 6	F	164	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JP4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JP4