Analysis of interatomic Contacts of Structural Units in PDB entry:
8JP9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JP9 entry

There are 8 chains in PDB entry 8JP9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 42	THR 367
B	PRO 42	SER 365
C	GLY 40	SER 144
D	GLY 40	SER 144
E	PRO 42	THR 367
F	PRO 42	SER 365
G	GLY 40	SER 144
H	GLY 40	SER 144

There are 41 helices in PDB entry 8JP9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	51	Right-handed 310
Helix 2	AA2	A	177	181	Right-handed 310
Helix 3	AA3	A	276	280	Right-handed 310
Helix 4	AA4	A	282	309	Right-handed alpha
Helix 5	AA5	A	325	362	Right-handed alpha
Helix 6	AA6	B	48	51	Right-handed 310
Helix 7	AA7	B	177	181	Right-handed 310
Helix 8	AA8	B	282	309	Right-handed alpha
Helix 9	AA9	B	327	361	Right-handed alpha
Helix 10	AB1	C	42	47	Right-handed alpha
Helix 11	AB2	C	48	57	Right-handed alpha
Helix 12	AB3	C	68	81	Right-handed alpha
Helix 13	AB4	C	89	98	Right-handed alpha
Helix 14	AB5	C	113	129	Right-handed alpha
Helix 15	AB6	C	137	142	Right-handed alpha
Helix 16	AB7	D	42	47	Right-handed alpha
Helix 17	AB8	D	48	57	Right-handed alpha
Helix 18	AB9	D	68	81	Right-handed alpha
Helix 19	AC1	D	89	98	Right-handed alpha
Helix 20	AC2	D	113	128	Right-handed alpha
Helix 21	AC3	D	137	142	Right-handed alpha
Helix 22	AC4	E	48	51	Right-handed 310
Helix 23	AC5	E	177	181	Right-handed 310
Helix 24	AC6	E	282	309	Right-handed alpha
Helix 25	AC7	E	325	362	Right-handed alpha
Helix 26	AC8	F	48	51	Right-handed 310
Helix 27	AC9	F	177	181	Right-handed 310
Helix 28	AD1	F	282	309	Right-handed alpha
Helix 29	AD2	F	327	361	Right-handed alpha
Helix 30	AD3	G	42	47	Right-handed alpha
Helix 31	AD4	G	48	57	Right-handed alpha
Helix 32	AD5	G	68	81	Right-handed alpha
Helix 33	AD6	G	89	98	Right-handed alpha
Helix 34	AD7	G	113	129	Right-handed alpha
Helix 35	AD8	G	137	142	Right-handed alpha
Helix 36	AD9	H	42	47	Right-handed alpha
Helix 37	AE1	H	48	57	Right-handed alpha
Helix 38	AE2	H	68	81	Right-handed alpha
Helix 39	AE3	H	89	98	Right-handed alpha
Helix 40	AE4	H	113	128	Right-handed alpha
Helix 41	AE5	H	137	142	Right-handed alpha

There are 16 sheets in PDB entry 8JP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	256	268	anti-parallel
Strand 3	A	80	83	anti-parallel
Strand 4	A	74	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	256	268	anti-parallel
Strand 3	A	104	113	anti-parallel
Strand 4	A	201	207	anti-parallel
Strand 5	A	211	216	anti-parallel
Strand 6	A	228	234	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	241	249	anti-parallel
Strand 4	A	99	100	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	241	249	anti-parallel
Strand 4	A	122	128	anti-parallel
Strand 5	A	145	152	anti-parallel
Strand 6	A	164	171	anti-parallel
Strand 7	A	188	191	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	256	268	anti-parallel
Strand 3	B	80	83	anti-parallel
Strand 4	B	74	75	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	256	268	anti-parallel
Strand 3	B	104	113	anti-parallel
Strand 4	B	201	208	anti-parallel
Strand 5	B	211	216	anti-parallel
Strand 6	B	228	234	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	241	249	anti-parallel
Strand 4	B	99	100	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	241	249	anti-parallel
Strand 4	B	122	128	anti-parallel
Strand 5	B	145	152	anti-parallel
Strand 6	B	164	171	anti-parallel
Strand 7	B	188	189	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	255	268	anti-parallel
Strand 3	E	80	83	anti-parallel
Strand 4	E	74	75	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	255	268	anti-parallel
Strand 3	E	104	114	anti-parallel
Strand 4	E	201	207	anti-parallel
Strand 5	E	211	216	anti-parallel
Strand 6	E	229	234	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	90	95	anti-parallel
Strand 3	E	241	249	anti-parallel
Strand 4	E	99	100	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	90	95	anti-parallel
Strand 3	E	241	249	anti-parallel
Strand 4	E	122	128	anti-parallel
Strand 5	E	145	152	anti-parallel
Strand 6	E	164	171	anti-parallel
Strand 7	E	188	191	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	46	first strand
Strand 2	F	255	268	anti-parallel
Strand 3	F	80	83	anti-parallel
Strand 4	F	74	75	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	46	first strand
Strand 2	F	255	268	anti-parallel
Strand 3	F	104	114	anti-parallel
Strand 4	F	201	208	anti-parallel
Strand 5	F	211	216	anti-parallel
Strand 6	F	228	234	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	90	95	anti-parallel
Strand 3	F	241	249	anti-parallel
Strand 4	F	99	100	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	90	95	anti-parallel
Strand 3	F	241	249	anti-parallel
Strand 4	F	122	128	anti-parallel
Strand 5	F	145	152	anti-parallel
Strand 6	F	164	171	anti-parallel
Strand 7	F	188	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JP9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JP9