Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JPB entry

There are 4 chains in PDB entry 8JPB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ALA 2	GLN 659
L	ARG 8	LEU 13
Q	ARG 38	LYS 354
R	SER 51	THR 378

There are 64 helices in PDB entry 8JPB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	3	19	Right-handed alpha
Helix 2	AA2	G	23	28	Right-handed 310
Helix 3	AA3	G	36	38	Right-handed 310
Helix 4	AA4	G	39	49	Right-handed alpha
Helix 5	AA5	G	54	60	Right-handed alpha
Helix 6	AA6	G	61	76	Right-handed alpha
Helix 7	AA7	G	78	93	Right-handed alpha
Helix 8	AA8	G	97	113	Right-handed alpha
Helix 9	AA9	G	113	119	Right-handed alpha
Helix 10	AB1	G	125	138	Right-handed alpha
Helix 11	AB2	G	146	158	Right-handed alpha
Helix 12	AB3	G	159	167	Right-handed alpha
Helix 13	AB4	G	168	183	Right-handed alpha
Helix 14	AB5	G	187	189	Right-handed 310
Helix 15	AB6	G	224	230	Right-handed alpha
Helix 16	AB7	G	232	248	Right-handed alpha
Helix 17	AB8	G	278	287	Right-handed alpha
Helix 18	AB9	G	290	311	Right-handed alpha
Helix 19	AC1	G	319	321	Right-handed 310
Helix 20	AC2	G	358	363	Right-handed alpha
Helix 21	AC3	G	370	387	Right-handed alpha
Helix 22	AC4	G	398	404	Right-handed alpha
Helix 23	AC5	G	405	408	Right-handed 310
Helix 24	AC6	G	418	429	Right-handed alpha
Helix 25	AC7	G	432	436	Right-handed 310
Helix 26	AC8	G	443	449	Right-handed alpha
Helix 27	AC9	G	450	454	Right-handed 310
Helix 28	AD1	G	457	464	Right-handed alpha
Helix 29	AD2	G	481	486	Right-handed alpha
Helix 30	AD3	G	489	494	Right-handed 310
Helix 31	AD4	G	499	504	Right-handed alpha
Helix 32	AD5	G	505	507	Right-handed 310
Helix 33	AD6	G	513	525	Right-handed alpha
Helix 34	AD7	G	525	548	Right-handed alpha
Helix 35	AD8	G	636	659	Right-handed alpha
Helix 36	AD9	Q	51	64	Right-handed alpha
Helix 37	AE1	Q	68	98	Right-handed alpha
Helix 38	AE2	Q	103	116	Right-handed alpha
Helix 39	AE3	Q	125	138	Right-handed alpha
Helix 40	AE4	Q	138	147	Right-handed alpha
Helix 41	AE5	Q	148	151	Right-handed 310
Helix 42	AE6	Q	156	164	Right-handed alpha
Helix 43	AE7	Q	164	169	Right-handed alpha
Helix 44	AE8	Q	175	181	Right-handed alpha
Helix 45	AE9	Q	209	214	Right-handed alpha
Helix 46	AF1	Q	215	220	Right-handed 310
Helix 47	AF2	Q	233	236	Right-handed 310
Helix 48	AF3	Q	246	261	Right-handed alpha
Helix 49	AF4	Q	262	265	Right-handed 310
Helix 50	AF5	Q	275	286	Right-handed alpha
Helix 51	AF6	Q	287	292	Right-handed alpha
Helix 52	AF7	Q	301	316	Right-handed alpha
Helix 53	AF8	Q	333	352	Right-handed alpha
Helix 54	AF9	R	59	88	Right-handed alpha
Helix 55	AG1	R	101	127	Right-handed alpha
Helix 56	AG2	R	136	172	Right-handed alpha
Helix 57	AG3	R	174	181	Right-handed alpha
Helix 58	AG4	R	183	200	Right-handed alpha
Helix 59	AG5	R	201	206	Right-handed alpha
Helix 60	AG6	R	229	245	Right-handed alpha
Helix 61	AG7	R	245	271	Right-handed alpha
Helix 62	AG8	R	293	328	Right-handed alpha
Helix 63	AG9	R	335	368	Right-handed alpha
Helix 64	AH1	R	368	378	Right-handed alpha

There are 6 sheets in PDB entry 8JPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	200	first strand
Strand 2	G	203	210	anti-parallel
Strand 3	G	216	223	anti-parallel
Strand 4	G	266	272	anti-parallel
Strand 5	G	257	262	anti-parallel
Strand 6	G	511	512	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	313	314	first strand
Strand 2	G	340	341	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	323	325	first strand
Strand 2	G	331	333	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	597	602	first strand
Strand 2	G	587	591	anti-parallel
Strand 3	G	577	584	anti-parallel
Strand 4	G	561	568	anti-parallel
Strand 5	G	629	633	anti-parallel
Strand 6	G	617	624	anti-parallel
Strand 7	G	606	614	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	190	192	first strand
Strand 2	Q	201	205	anti-parallel
Strand 3	Q	40	46	parallel
Strand 4	Q	223	231	parallel
Strand 5	Q	268	274	parallel
Strand 6	Q	324	328	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	207	211	first strand
Strand 2	R	222	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JPB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPB