Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JPD entry

There is 1 chain in PDB entry 8JPD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ALA 2	GLN 659

There are 34 helices in PDB entry 8JPD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	3	19	Right-handed alpha
Helix 2	AA2	G	23	28	Right-handed 310
Helix 3	AA3	G	36	38	Right-handed 310
Helix 4	AA4	G	39	49	Right-handed alpha
Helix 5	AA5	G	54	60	Right-handed alpha
Helix 6	AA6	G	61	76	Right-handed alpha
Helix 7	AA7	G	79	94	Right-handed alpha
Helix 8	AA8	G	97	113	Right-handed alpha
Helix 9	AA9	G	113	119	Right-handed alpha
Helix 10	AB1	G	125	138	Right-handed alpha
Helix 11	AB2	G	146	158	Right-handed alpha
Helix 12	AB3	G	159	168	Right-handed alpha
Helix 13	AB4	G	169	183	Right-handed alpha
Helix 14	AB5	G	187	189	Right-handed 310
Helix 15	AB6	G	224	230	Right-handed alpha
Helix 16	AB7	G	232	248	Right-handed alpha
Helix 17	AB8	G	278	287	Right-handed alpha
Helix 18	AB9	G	290	311	Right-handed alpha
Helix 19	AC1	G	319	321	Right-handed 310
Helix 20	AC2	G	358	363	Right-handed alpha
Helix 21	AC3	G	370	387	Right-handed alpha
Helix 22	AC4	G	398	403	Right-handed alpha
Helix 23	AC5	G	404	408	Right-handed 310
Helix 24	AC6	G	418	429	Right-handed alpha
Helix 25	AC7	G	443	449	Right-handed alpha
Helix 26	AC8	G	450	454	Right-handed 310
Helix 27	AC9	G	457	464	Right-handed alpha
Helix 28	AD1	G	481	486	Right-handed alpha
Helix 29	AD2	G	489	494	Right-handed 310
Helix 30	AD3	G	499	504	Right-handed alpha
Helix 31	AD4	G	505	507	Right-handed 310
Helix 32	AD5	G	513	525	Right-handed alpha
Helix 33	AD6	G	525	548	Right-handed alpha
Helix 34	AD7	G	636	659	Right-handed alpha

There are 4 sheets in PDB entry 8JPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	200	first strand
Strand 2	G	203	210	anti-parallel
Strand 3	G	216	223	anti-parallel
Strand 4	G	266	272	anti-parallel
Strand 5	G	257	262	anti-parallel
Strand 6	G	511	512	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	313	314	first strand
Strand 2	G	340	341	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	323	325	first strand
Strand 2	G	331	333	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	597	602	first strand
Strand 2	G	587	591	anti-parallel
Strand 3	G	577	583	anti-parallel
Strand 4	G	561	567	anti-parallel
Strand 5	G	629	633	anti-parallel
Strand 6	G	617	624	anti-parallel
Strand 7	G	606	614	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JPD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPD