Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JPE entry

There is 1 chain in PDB entry 8JPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Q
 ARG 38LYS 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8JPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Q
51 64Right-handed alpha
Helix 2
AA2
Q
68 98Right-handed alpha
Helix 3
AA3
Q
103 116Right-handed alpha
Helix 4
AA4
Q
125 138Right-handed alpha
Helix 5
AA5
Q
138 147Right-handed alpha
Helix 6
AA6
Q
148 151Right-handed 310
Helix 7
AA7
Q
156 164Right-handed alpha
Helix 8
AA8
Q
164 169Right-handed alpha
Helix 9
AA9
Q
175 181Right-handed alpha
Helix 10
AB1
Q
209 214Right-handed alpha
Helix 11
AB2
Q
215 220Right-handed 310
Helix 12
AB3
Q
233 236Right-handed 310
Helix 13
AB4
Q
246 261Right-handed alpha
Helix 14
AB5
Q
262 265Right-handed 310
Helix 15
AB6
Q
275 286Right-handed alpha
Helix 16
AB7
Q
287 292Right-handed alpha
Helix 17
AB8
Q
301 316Right-handed alpha
Helix 18
AB9
Q
333 352Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 8JPE.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
190 192first strand
Strand 2
Q
201 205anti-parallel
Strand 3
Q
40 46parallel
Strand 4
Q
223 231parallel
Strand 5
Q
268 274parallel
Strand 6
Q
324 328parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il