Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JPJ entry

There are 2 chains in PDB entry 8JPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 46ILE 869
B
 LYS 46ILE 869
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 8JPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 68Right-handed alpha
Helix 2
AA2
A
69 124Right-handed alpha
Helix 3
AA3
A
126 151Right-handed alpha
Helix 4
AA4
A
152 155Right-handed 310
Helix 5
AA5
A
158 168Right-handed alpha
Helix 6
AA6
A
176 193Right-handed alpha
Helix 7
AA7
A
201 218Right-handed alpha
Helix 8
AA8
A
234 255Right-handed alpha
Helix 9
AA9
A
256 266Right-handed alpha
Helix 10
AB1
A
276 299Right-handed alpha
Helix 11
AB2
A
330 332Right-handed 310
Helix 12
AB3
A
333 365Right-handed alpha
Helix 13
AB4
A
375 395Right-handed alpha
Helix 14
AB5
A
437 444Right-handed alpha
Helix 15
AB6
A
445 456Right-handed alpha
Helix 16
AB7
A
461 480Right-handed alpha
Helix 17
AB8
A
488 511Right-handed alpha
Helix 18
AB9
A
518 534Right-handed alpha
Helix 19
AC1
A
538 549Right-handed alpha
Helix 20
AC2
A
550 552Right-handed 310
Helix 21
AC3
A
553 569Right-handed alpha
Helix 22
AC4
A
574 582Right-handed alpha
Helix 23
AC5
A
593 599Right-handed alpha
Helix 24
AC6
A
618 628Right-handed alpha
Helix 25
AC7
A
650 664Right-handed alpha
Helix 26
AC8
A
666 677Right-handed alpha
Helix 27
AC9
A
732 736Right-handed alpha
Helix 28
AD1
A
747 756Right-handed alpha
Helix 29
AD2
A
773 780Right-handed alpha
Helix 30
AD3
A
819 830Right-handed alpha
Helix 31
AD4
A
849 853Right-handed 310
Helix 32
AD5
A
854 869Right-handed alpha
Helix 33
AD6
B
58 68Right-handed alpha
Helix 34
AD7
B
69 124Right-handed alpha
Helix 35
AD8
B
126 151Right-handed alpha
Helix 36
AD9
B
152 155Right-handed 310
Helix 37
AE1
B
158 168Right-handed alpha
Helix 38
AE2
B
176 193Right-handed alpha
Helix 39
AE3
B
201 218Right-handed alpha
Helix 40
AE4
B
234 255Right-handed alpha
Helix 41
AE5
B
256 266Right-handed alpha
Helix 42
AE6
B
276 299Right-handed alpha
Helix 43
AE7
B
330 332Right-handed 310
Helix 44
AE8
B
333 365Right-handed alpha
Helix 45
AE9
B
375 395Right-handed alpha
Helix 46
AF1
B
437 444Right-handed alpha
Helix 47
AF2
B
445 456Right-handed alpha
Helix 48
AF3
B
461 480Right-handed alpha
Helix 49
AF4
B
488 511Right-handed alpha
Helix 50
AF5
B
518 534Right-handed alpha
Helix 51
AF6
B
538 549Right-handed alpha
Helix 52
AF7
B
550 552Right-handed 310
Helix 53
AF8
B
553 569Right-handed alpha
Helix 54
AF9
B
574 582Right-handed alpha
Helix 55
AG1
B
593 599Right-handed alpha
Helix 56
AG2
B
618 628Right-handed alpha
Helix 57
AG3
B
650 664Right-handed alpha
Helix 58
AG4
B
666 677Right-handed alpha
Helix 59
AG5
B
732 736Right-handed alpha
Helix 60
AG6
B
747 756Right-handed alpha
Helix 61
AG7
B
773 780Right-handed alpha
Helix 62
AG8
B
819 830Right-handed alpha
Helix 63
AG9
B
849 853Right-handed 310
Helix 64
AH1
B
854 869Right-handed alpha
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There are 8 sheets in PDB entry 8JPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 401first strand
Strand 2
A
434 436anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 617first strand
Strand 2
A
800 801anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 638first strand
Strand 2
A
739 746anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
835 838first strand
Strand 2
A
844 848anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 401first strand
Strand 2
B
434 436anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
616 617first strand
Strand 2
B
800 801anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
632 638first strand
Strand 2
B
739 746anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
835 838first strand
Strand 2
B
844 848anti-parallel
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