Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JPP entry

There are 4 chains in PDB entry 8JPP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	VAL 384
B	GLU 10	ASN 340
G	LYS 14	ARG 62
R	THR 10	LEU 317

There are 26 helices in PDB entry 8JPP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	40	Right-handed alpha
Helix 2	AA2	A	52	62	Right-handed alpha
Helix 3	AA3	A	233	241	Right-handed 310
Helix 4	AA4	A	258	268	Right-handed alpha
Helix 5	AA5	A	283	293	Right-handed alpha
Helix 6	AA6	A	297	302	Right-handed alpha
Helix 7	AA7	A	303	306	Right-handed 310
Helix 8	AA8	A	321	341	Right-handed alpha
Helix 9	AA9	A	360	381	Right-handed alpha
Helix 10	AB1	B	11	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	B	35	37	Right-handed 310
Helix 13	AB4	G	15	24	Right-handed alpha
Helix 14	AB5	G	29	44	Right-handed alpha
Helix 15	AB6	R	11	50	Right-handed alpha
Helix 16	AB7	R	56	75	Right-handed alpha
Helix 17	AB8	R	75	86	Right-handed alpha
Helix 18	AB9	R	90	126	Right-handed alpha
Helix 19	AC1	R	135	154	Right-handed alpha
Helix 20	AC2	R	157	162	Right-handed alpha
Helix 21	AC3	R	180	196	Right-handed alpha
Helix 22	AC4	R	196	221	Right-handed alpha
Helix 23	AC5	R	227	258	Right-handed alpha
Helix 24	AC6	R	266	285	Right-handed alpha
Helix 25	AC7	R	286	296	Right-handed alpha
Helix 26	AC8	R	301	317	Right-handed alpha

There are 8 sheets in PDB entry 8JPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	276	282	parallel
Strand 6	A	349	353	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	337	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	178	181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JPP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPP