Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JPR entry

There are 2 chains in PDB entry 8JPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 46ILE 869
B
 LYS 46ILE 869
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8JPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 68Right-handed alpha
Helix 2
AA2
A
69 124Right-handed alpha
Helix 3
AA3
A
127 151Right-handed alpha
Helix 4
AA4
A
152 155Right-handed 310
Helix 5
AA5
A
158 168Right-handed alpha
Helix 6
AA6
A
176 191Right-handed alpha
Helix 7
AA7
A
192 194Right-handed 310
Helix 8
AA8
A
199 214Right-handed alpha
Helix 9
AA9
A
234 255Right-handed alpha
Helix 10
AB1
A
256 268Right-handed alpha
Helix 11
AB2
A
273 299Right-handed alpha
Helix 12
AB3
A
333 366Right-handed alpha
Helix 13
AB4
A
375 395Right-handed alpha
Helix 14
AB5
A
436 443Right-handed alpha
Helix 15
AB6
A
445 449Right-handed 310
Helix 16
AB7
A
450 456Right-handed alpha
Helix 17
AB8
A
461 480Right-handed alpha
Helix 18
AB9
A
489 510Right-handed alpha
Helix 19
AC1
A
517 534Right-handed alpha
Helix 20
AC2
A
538 549Right-handed alpha
Helix 21
AC3
A
554 569Right-handed alpha
Helix 22
AC4
A
574 583Right-handed alpha
Helix 23
AC5
A
594 599Right-handed 310
Helix 24
AC6
A
600 605Right-handed alpha
Helix 25
AC7
A
618 628Right-handed alpha
Helix 26
AC8
A
650 664Right-handed alpha
Helix 27
AC9
A
666 677Right-handed alpha
Helix 28
AD1
A
732 736Right-handed alpha
Helix 29
AD2
A
747 756Right-handed alpha
Helix 30
AD3
A
773 778Right-handed alpha
Helix 31
AD4
A
819 830Right-handed alpha
Helix 32
AD5
A
849 853Right-handed 310
Helix 33
AD6
A
854 869Right-handed alpha
Helix 34
AD7
B
58 68Right-handed alpha
Helix 35
AD8
B
69 124Right-handed alpha
Helix 36
AD9
B
127 151Right-handed alpha
Helix 37
AE1
B
152 155Right-handed 310
Helix 38
AE2
B
158 168Right-handed alpha
Helix 39
AE3
B
176 191Right-handed alpha
Helix 40
AE4
B
192 194Right-handed 310
Helix 41
AE5
B
199 214Right-handed alpha
Helix 42
AE6
B
234 255Right-handed alpha
Helix 43
AE7
B
256 268Right-handed alpha
Helix 44
AE8
B
273 299Right-handed alpha
Helix 45
AE9
B
333 366Right-handed alpha
Helix 46
AF1
B
375 395Right-handed alpha
Helix 47
AF2
B
436 443Right-handed alpha
Helix 48
AF3
B
445 449Right-handed 310
Helix 49
AF4
B
450 456Right-handed alpha
Helix 50
AF5
B
461 480Right-handed alpha
Helix 51
AF6
B
489 510Right-handed alpha
Helix 52
AF7
B
517 534Right-handed alpha
Helix 53
AF8
B
538 549Right-handed alpha
Helix 54
AF9
B
554 569Right-handed alpha
Helix 55
AG1
B
574 583Right-handed alpha
Helix 56
AG2
B
594 599Right-handed 310
Helix 57
AG3
B
600 605Right-handed alpha
Helix 58
AG4
B
618 628Right-handed alpha
Helix 59
AG5
B
650 664Right-handed alpha
Helix 60
AG6
B
666 677Right-handed alpha
Helix 61
AG7
B
732 736Right-handed alpha
Helix 62
AG8
B
747 756Right-handed alpha
Helix 63
AG9
B
773 778Right-handed alpha
Helix 64
AH1
B
819 830Right-handed alpha
Helix 65
AH2
B
849 853Right-handed 310
Helix 66
AH3
B
854 869Right-handed alpha
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There are 8 sheets in PDB entry 8JPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
434 435anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 617first strand
Strand 2
A
800 801anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 638first strand
Strand 2
A
739 746anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
835 838first strand
Strand 2
A
844 848anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 401first strand
Strand 2
B
434 435anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
616 617first strand
Strand 2
B
800 801anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
632 638first strand
Strand 2
B
739 746anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
835 838first strand
Strand 2
B
844 848anti-parallel
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