Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JPS entry

There are 4 chains in PDB entry 8JPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 46THR 312
D
 SER 8LYS 70
A
 GLU 46THR 312
C
 SER 8LYS 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 8JPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
58 61Right-handed 310
Helix 2
AA2
B
62 82Right-handed alpha
Helix 3
AA3
B
85 89Right-handed 310
Helix 4
AA4
B
95 113Right-handed alpha
Helix 5
AA5
B
114 116Right-handed 310
Helix 6
AA6
B
125 158Right-handed alpha
Helix 7
AA7
B
162 181Right-handed alpha
Helix 8
AA8
B
181 187Right-handed alpha
Helix 9
AA9
B
200 202Right-handed 310
Helix 10
AB1
B
203 226Right-handed alpha
Helix 11
AB2
B
244 246Right-handed 310
Helix 12
AB3
B
247 268Right-handed alpha
Helix 13
AB4
B
275 295Right-handed alpha
Helix 14
AB5
B
295 311Right-handed alpha
Helix 15
AB6
D
57 67Right-handed alpha
Helix 16
AB7
A
58 61Right-handed 310
Helix 17
AB8
A
62 82Right-handed alpha
Helix 18
AB9
A
85 89Right-handed 310
Helix 19
AC1
A
95 113Right-handed alpha
Helix 20
AC2
A
114 117Right-handed 310
Helix 21
AC3
A
125 153Right-handed alpha
Helix 22
AC4
A
153 158Right-handed alpha
Helix 23
AC5
A
162 181Right-handed alpha
Helix 24
AC6
A
181 187Right-handed alpha
Helix 25
AC7
A
203 227Right-handed alpha
Helix 26
AC8
A
244 252Right-handed 310
Helix 27
AC9
A
253 268Right-handed alpha
Helix 28
AD1
A
275 295Right-handed alpha
Helix 29
AD2
A
295 312Right-handed alpha
Helix 30
AD3
C
57 67Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8JPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
195 197anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 29first strand
Strand 2
D
41 45anti-parallel
Strand 3
D
50 53anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
C
10 11anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
194 197anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 30first strand
Strand 2
C
41 45anti-parallel
Strand 3
C
50 53anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il