Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JPT entry

There are 3 chains in PDB entry 8JPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 24GLY 441
B
 GLY 24GLY 441
C
 GLY 24THR 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8JPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 48Right-handed alpha
Helix 2
AA2
A
56 67Right-handed alpha
Helix 3
AA3
A
81 95Right-handed alpha
Helix 4
AA4
A
127 134Right-handed alpha
Helix 5
AA5
A
134 149Right-handed alpha
Helix 6
AA6
A
150 152Right-handed 310
Helix 7
AA7
A
155 162Right-handed alpha
Helix 8
AA8
A
171 193Right-handed alpha
Helix 9
AA9
A
205 215Right-handed alpha
Helix 10
AB1
A
218 234Right-handed alpha
Helix 11
AB2
A
235 237Right-handed 310
Helix 12
AB3
A
248 257Right-handed alpha
Helix 13
AB4
A
278 292Right-handed alpha
Helix 14
AB5
A
307 312Right-handed 310
Helix 15
AB6
A
313 322Right-handed alpha
Helix 16
AB7
A
348 358Right-handed alpha
Helix 17
AB8
A
361 372Right-handed alpha
Helix 18
AB9
A
386 396Right-handed alpha
Helix 19
AC1
A
413 427Right-handed alpha
Helix 20
AC2
A
432 441Right-handed alpha
Helix 21
AC3
B
33 49Right-handed alpha
Helix 22
AC4
B
56 67Right-handed alpha
Helix 23
AC5
B
81 95Right-handed alpha
Helix 24
AC6
B
127 134Right-handed alpha
Helix 25
AC7
B
134 149Right-handed alpha
Helix 26
AC8
B
150 152Right-handed 310
Helix 27
AC9
B
155 162Right-handed alpha
Helix 28
AD1
B
171 193Right-handed alpha
Helix 29
AD2
B
205 215Right-handed alpha
Helix 30
AD3
B
218 234Right-handed alpha
Helix 31
AD4
B
235 237Right-handed 310
Helix 32
AD5
B
248 257Right-handed alpha
Helix 33
AD6
B
278 291Right-handed alpha
Helix 34
AD7
B
307 312Right-handed 310
Helix 35
AD8
B
313 322Right-handed alpha
Helix 36
AD9
B
348 358Right-handed alpha
Helix 37
AE1
B
361 372Right-handed alpha
Helix 38
AE2
B
386 397Right-handed alpha
Helix 39
AE3
B
413 427Right-handed alpha
Helix 40
AE4
B
432 441Right-handed alpha
Helix 41
AE5
C
35 48Right-handed alpha
Helix 42
AE6
C
56 67Right-handed alpha
Helix 43
AE7
C
81 95Right-handed alpha
Helix 44
AE8
C
127 134Right-handed alpha
Helix 45
AE9
C
134 149Right-handed alpha
Helix 46
AF1
C
150 152Right-handed 310
Helix 47
AF2
C
155 162Right-handed alpha
Helix 48
AF3
C
171 193Right-handed alpha
Helix 49
AF4
C
205 215Right-handed alpha
Helix 50
AF5
C
218 234Right-handed alpha
Helix 51
AF6
C
235 237Right-handed 310
Helix 52
AF7
C
248 256Right-handed alpha
Helix 53
AF8
C
278 292Right-handed alpha
Helix 54
AF9
C
307 312Right-handed 310
Helix 55
AG1
C
313 321Right-handed alpha
Helix 56
AG2
C
348 358Right-handed alpha
Helix 57
AG3
C
361 372Right-handed alpha
Helix 58
AG4
C
386 397Right-handed alpha
Helix 59
AG5
C
412 426Right-handed alpha
Helix 60
AG6
C
432 440Right-handed alpha
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There are 9 sheets in PDB entry 8JPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 32first strand
Strand 2
A
73 79anti-parallel
Strand 3
A
101 104anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
199 202parallel
Strand 3
A
111 116parallel
Strand 4
A
374 379parallel
Strand 5
A
402 404parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 269first strand
Strand 2
A
272 277anti-parallel
Strand 3
A
241 245anti-parallel
Strand 4
A
296 298anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 32first strand
Strand 2
B
73 79anti-parallel
Strand 3
B
101 104anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 342first strand
Strand 2
B
332 334anti-parallel
Strand 3
B
199 202parallel
Strand 4
B
111 116parallel
Strand 5
B
374 379parallel
Strand 6
B
402 404parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 269first strand
Strand 2
B
272 277anti-parallel
Strand 3
B
241 245anti-parallel
Strand 4
B
296 298anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 32first strand
Strand 2
C
73 79anti-parallel
Strand 3
C
101 104anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
333 334first strand
Strand 2
C
200 202parallel
Strand 3
C
111 116parallel
Strand 4
C
374 379parallel
Strand 5
C
402 404parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 269first strand
Strand 2
C
272 277anti-parallel
Strand 3
C
241 245anti-parallel
Strand 4
C
296 298anti-parallel
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