Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JPU entry

There are 4 chains in PDB entry 8JPU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 54	PHE 469
B	VAL 54	LEU 468
C	VAL 54	GLY 470
D	VAL 54	VAL 204

There are 80 helices in PDB entry 8JPU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	79	Right-handed alpha
Helix 2	AA2	A	84	95	Right-handed alpha
Helix 3	AA3	A	109	123	Right-handed alpha
Helix 4	AA4	A	157	164	Right-handed alpha
Helix 5	AA5	A	164	180	Right-handed alpha
Helix 6	AA6	A	185	191	Right-handed alpha
Helix 7	AA7	A	201	223	Right-handed alpha
Helix 8	AA8	A	235	244	Right-handed alpha
Helix 9	AA9	A	248	263	Right-handed alpha
Helix 10	AB1	A	264	266	Right-handed 310
Helix 11	AB2	A	278	287	Right-handed alpha
Helix 12	AB3	A	288	291	Right-handed 310
Helix 13	AB4	A	309	323	Right-handed alpha
Helix 14	AB5	A	339	344	Right-handed 310
Helix 15	AB6	A	345	353	Right-handed alpha
Helix 16	AB7	A	375	379	Right-handed 310
Helix 17	AB8	A	380	390	Right-handed alpha
Helix 18	AB9	A	394	404	Right-handed alpha
Helix 19	AC1	A	418	430	Right-handed alpha
Helix 20	AC2	A	445	459	Right-handed alpha
Helix 21	AC3	A	464	469	Right-handed alpha
Helix 22	AC4	B	63	71	Right-handed alpha
Helix 23	AC5	B	119	123	Right-handed 310
Helix 24	AC6	B	157	164	Right-handed alpha
Helix 25	AC7	B	164	180	Right-handed alpha
Helix 26	AC8	B	185	191	Right-handed alpha
Helix 27	AC9	B	201	223	Right-handed alpha
Helix 28	AD1	B	235	244	Right-handed alpha
Helix 29	AD2	B	248	264	Right-handed alpha
Helix 30	AD3	B	265	267	Right-handed 310
Helix 31	AD4	B	278	287	Right-handed alpha
Helix 32	AD5	B	288	291	Right-handed 310
Helix 33	AD6	B	310	323	Right-handed alpha
Helix 34	AD7	B	339	344	Right-handed 310
Helix 35	AD8	B	345	354	Right-handed alpha
Helix 36	AD9	B	375	379	Right-handed 310
Helix 37	AE1	B	380	390	Right-handed alpha
Helix 38	AE2	B	394	404	Right-handed alpha
Helix 39	AE3	B	418	430	Right-handed alpha
Helix 40	AE4	B	445	460	Right-handed alpha
Helix 41	AE5	C	62	79	Right-handed alpha
Helix 42	AE6	C	84	95	Right-handed alpha
Helix 43	AE7	C	109	122	Right-handed alpha
Helix 44	AE8	C	157	164	Right-handed alpha
Helix 45	AE9	C	164	180	Right-handed alpha
Helix 46	AF1	C	185	191	Right-handed alpha
Helix 47	AF2	C	201	223	Right-handed alpha
Helix 48	AF3	C	235	244	Right-handed alpha
Helix 49	AF4	C	248	264	Right-handed alpha
Helix 50	AF5	C	265	267	Right-handed 310
Helix 51	AF6	C	278	285	Right-handed alpha
Helix 52	AF7	C	286	291	Right-handed 310
Helix 53	AF8	C	309	323	Right-handed alpha
Helix 54	AF9	C	339	344	Right-handed 310
Helix 55	AG1	C	345	354	Right-handed alpha
Helix 56	AG2	C	375	379	Right-handed 310
Helix 57	AG3	C	380	390	Right-handed alpha
Helix 58	AG4	C	394	403	Right-handed alpha
Helix 59	AG5	C	418	430	Right-handed alpha
Helix 60	AG6	C	445	459	Right-handed alpha
Helix 61	AG7	C	464	469	Right-handed alpha
Helix 62	AG8	D	62	71	Right-handed alpha
Helix 63	AG9	D	119	123	Right-handed 310
Helix 64	AH1	D	157	164	Right-handed alpha
Helix 65	AH2	D	164	180	Right-handed alpha
Helix 66	AH3	D	185	191	Right-handed alpha
Helix 67	AH4	D	201	223	Right-handed alpha
Helix 68	AH5	D	235	244	Right-handed alpha
Helix 69	AH6	D	248	264	Right-handed alpha
Helix 70	AH7	D	265	267	Right-handed 310
Helix 71	AH8	D	278	287	Right-handed alpha
Helix 72	AH9	D	288	291	Right-handed 310
Helix 73	AI1	D	309	323	Right-handed alpha
Helix 74	AI2	D	339	344	Right-handed 310
Helix 75	AI3	D	345	354	Right-handed alpha
Helix 76	AI4	D	375	379	Right-handed 310
Helix 77	AI5	D	380	390	Right-handed alpha
Helix 78	AI6	D	394	404	Right-handed alpha
Helix 79	AI7	D	418	429	Right-handed alpha
Helix 80	AI8	D	445	459	Right-handed alpha

There are 12 sheets in PDB entry 8JPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	101	106	anti-parallel
Strand 3	A	129	131	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	365	366	anti-parallel
Strand 3	A	229	232	parallel
Strand 4	A	142	146	parallel
Strand 5	A	408	411	parallel
Strand 6	A	434	437	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	271	275	anti-parallel
Strand 3	A	303	308	anti-parallel
Strand 4	A	293	300	anti-parallel
Strand 5	A	392	393	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	101	105	anti-parallel
Strand 3	B	129	130	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	365	366	anti-parallel
Strand 3	B	229	232	parallel
Strand 4	B	142	146	parallel
Strand 5	B	408	411	parallel
Strand 6	B	434	436	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	303	309	anti-parallel
Strand 4	B	293	300	anti-parallel
Strand 5	B	392	393	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	101	106	anti-parallel
Strand 3	C	129	131	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	365	366	anti-parallel
Strand 3	C	229	232	parallel
Strand 4	C	142	146	parallel
Strand 5	C	408	411	parallel
Strand 6	C	434	436	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	271	275	anti-parallel
Strand 3	C	303	308	anti-parallel
Strand 4	C	293	300	anti-parallel
Strand 5	C	392	393	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	101	106	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	232	first strand
Strand 2	D	142	146	parallel
Strand 3	D	408	411	parallel
Strand 4	D	434	436	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	271	275	anti-parallel
Strand 3	D	303	308	anti-parallel
Strand 4	D	293	300	anti-parallel
Strand 5	D	392	393	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JPU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPU