Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JPV entry

There is 1 chain in PDB entry 8JPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLU 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8JPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 37Right-handed alpha
Helix 2
AA2
A
54 68Right-handed alpha
Helix 3
AA3
A
90 93Right-handed 310
Helix 4
AA4
A
94 108Right-handed alpha
Helix 5
AA5
A
157 169Right-handed alpha
Helix 6
AA6
A
179 182Right-handed 310
Helix 7
AA7
A
183 194Right-handed alpha
Helix 8
AA8
A
223 230Right-handed alpha
Helix 9
AA9
A
233 243Right-handed alpha
Helix 10
AB1
A
256 264Right-handed alpha
Helix 11
AB2
A
265 269Right-handed 310
Helix 12
AB3
A
277 292Right-handed alpha
Helix 13
AB4
A
293 307Right-handed alpha
Helix 14
AB5
A
317 330Right-handed alpha
Helix 15
AB6
A
334 347Right-handed alpha
Helix 16
AB7
A
353 361Right-handed alpha
Helix 17
AB8
A
362 379Right-handed alpha
Helix 18
AB9
A
383 399Right-handed alpha
Helix 19
AC1
A
401 415Right-handed alpha
Helix 20
AC2
A
421 430Right-handed alpha
Helix 21
AC3
A
430 444Right-handed alpha
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There are 5 sheets in PDB entry 8JPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
40 43parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
81 83anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
117 120anti-parallel
Strand 3
A
147 150anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 131first strand
Strand 2
A
135 140anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
200 204parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il