Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JPW entry

There is 1 chain in PDB entry 8JPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23ALA 679
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8JPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 37Right-handed alpha
Helix 2
AA2
A
46 57Right-handed alpha
Helix 3
AA3
A
75 88Right-handed alpha
Helix 4
AA4
A
137 147Right-handed alpha
Helix 5
AA5
A
213 219Right-handed alpha
Helix 6
AA6
A
220 227Right-handed alpha
Helix 7
AA7
A
237 252Right-handed alpha
Helix 8
AA8
A
266 282Right-handed alpha
Helix 9
AA9
A
285 293Right-handed alpha
Helix 10
AB1
A
297 308Right-handed alpha
Helix 11
AB2
A
310 314Right-handed 310
Helix 12
AB3
A
317 324Right-handed alpha
Helix 13
AB4
A
342 351Right-handed alpha
Helix 14
AB5
A
414 419Right-handed alpha
Helix 15
AB6
A
428 438Right-handed alpha
Helix 16
AB7
A
453 457Right-handed 310
Helix 17
AB8
A
458 468Right-handed alpha
Helix 18
AB9
A
472 481Right-handed alpha
Helix 19
AC1
A
573 581Right-handed alpha
Helix 20
AC2
A
583 600Right-handed alpha
Helix 21
AC3
A
601 605Right-handed 310
Helix 22
AC4
A
632 643Right-handed alpha
Helix 23
AC5
A
652 656Right-handed 310
Helix 24
AC6
A
662 678Right-handed alpha
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There are 9 sheets in PDB entry 8JPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
91 95parallel
Strand 3
A
68 72parallel
Strand 4
A
408 411parallel
Strand 5
A
648 650parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
126 127anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
334 337anti-parallel
Strand 3
A
151 154anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
183 185anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 212first strand
Strand 2
A
203 206anti-parallel
Strand 3
A
541 544parallel
Strand 4
A
550 552anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
262 264anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 406first strand
Strand 2
A
387 393anti-parallel
Strand 3
A
360 367anti-parallel
Strand 4
A
422 423parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 440first strand
Strand 2
A
627 628anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 572first strand
Strand 2
A
443 450anti-parallel
Strand 3
A
607 615anti-parallel
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