Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JPX entry

There are 8 chains in PDB entry 8JPX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	VAL 770
H	T 1	A 17
U	A 4	T 20
A	MET 1	VAL 770
G	T 1	A 17
T	A 4	T 20
E	T 1	T 6
F	T 1	T 6

There are 52 helices in PDB entry 8JPX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	13	17	Right-handed 310
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	B	40	48	Right-handed alpha
Helix 4	AA4	B	79	83	Right-handed 310
Helix 5	AA5	B	84	99	Right-handed alpha
Helix 6	AA6	B	102	111	Right-handed alpha
Helix 7	AA7	B	162	173	Right-handed alpha
Helix 8	AA8	B	206	222	Right-handed alpha
Helix 9	AA9	B	226	236	Right-handed alpha
Helix 10	AB1	B	273	277	Right-handed 310
Helix 11	AB2	B	278	286	Right-handed alpha
Helix 12	AB3	B	292	306	Right-handed alpha
Helix 13	AB4	B	325	329	Right-handed 310
Helix 14	AB5	B	343	348	Right-handed 310
Helix 15	AB6	B	373	377	Right-handed 310
Helix 16	AB7	B	393	411	Right-handed alpha
Helix 17	AB8	B	411	421	Right-handed alpha
Helix 18	AB9	B	452	467	Right-handed alpha
Helix 19	AC1	B	487	498	Right-handed alpha
Helix 20	AC2	B	507	513	Right-handed alpha
Helix 21	AC3	B	523	538	Right-handed alpha
Helix 22	AC4	B	599	610	Right-handed alpha
Helix 23	AC5	B	632	647	Right-handed alpha
Helix 24	AC6	B	713	725	Right-handed alpha
Helix 25	AC7	B	738	753	Right-handed alpha
Helix 26	AC8	B	761	765	Right-handed 310
Helix 27	AC9	A	13	17	Right-handed 310
Helix 28	AD1	A	29	34	Right-handed alpha
Helix 29	AD2	A	40	48	Right-handed alpha
Helix 30	AD3	A	79	83	Right-handed 310
Helix 31	AD4	A	84	99	Right-handed alpha
Helix 32	AD5	A	102	111	Right-handed alpha
Helix 33	AD6	A	162	173	Right-handed alpha
Helix 34	AD7	A	206	222	Right-handed alpha
Helix 35	AD8	A	226	236	Right-handed alpha
Helix 36	AD9	A	273	277	Right-handed 310
Helix 37	AE1	A	278	286	Right-handed alpha
Helix 38	AE2	A	292	306	Right-handed alpha
Helix 39	AE3	A	325	329	Right-handed 310
Helix 40	AE4	A	343	348	Right-handed 310
Helix 41	AE5	A	374	378	Right-handed 310
Helix 42	AE6	A	393	411	Right-handed alpha
Helix 43	AE7	A	411	421	Right-handed alpha
Helix 44	AE8	A	452	467	Right-handed alpha
Helix 45	AE9	A	487	498	Right-handed alpha
Helix 46	AF1	A	507	513	Right-handed alpha
Helix 47	AF2	A	523	538	Right-handed alpha
Helix 48	AF3	A	599	610	Right-handed alpha
Helix 49	AF4	A	632	647	Right-handed alpha
Helix 50	AF5	A	713	725	Right-handed alpha
Helix 51	AF6	A	738	753	Right-handed alpha
Helix 52	AF7	A	761	765	Right-handed 310

There are 18 sheets in PDB entry 8JPX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	317	323	anti-parallel
Strand 3	B	669	673	anti-parallel
Strand 4	B	676	680	anti-parallel
Strand 5	B	694	703	anti-parallel
Strand 6	B	649	656	anti-parallel
Strand 7	B	622	628	parallel
Strand 8	B	553	561	parallel
Strand 9	B	568	576	anti-parallel
Strand 10	B	584	593	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	317	323	anti-parallel
Strand 3	B	669	673	anti-parallel
Strand 4	B	676	680	anti-parallel
Strand 5	B	694	703	anti-parallel
Strand 6	B	706	709	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	139	151	anti-parallel
Strand 3	B	122	134	anti-parallel
Strand 4	B	117	119	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	54	first strand
Strand 2	B	59	62	anti-parallel
Strand 3	B	21	26	anti-parallel
Strand 4	B	72	78	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	244	249	anti-parallel
Strand 3	B	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	244	249	anti-parallel
Strand 3	B	189	192	anti-parallel
Strand 4	B	179	181	anti-parallel
Strand 5	B	268	270	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	199	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	544	545	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	448	first strand
Strand 2	B	384	389	parallel
Strand 3	B	473	479	parallel
Strand 4	B	500	506	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	317	323	anti-parallel
Strand 3	A	669	673	anti-parallel
Strand 4	A	676	680	anti-parallel
Strand 5	A	694	703	anti-parallel
Strand 6	A	649	656	anti-parallel
Strand 7	A	622	628	parallel
Strand 8	A	553	561	parallel
Strand 9	A	568	576	anti-parallel
Strand 10	A	584	593	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	317	323	anti-parallel
Strand 3	A	669	673	anti-parallel
Strand 4	A	676	680	anti-parallel
Strand 5	A	694	703	anti-parallel
Strand 6	A	706	709	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	139	151	anti-parallel
Strand 3	A	122	134	anti-parallel
Strand 4	A	117	119	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	54	first strand
Strand 2	A	59	62	anti-parallel
Strand 3	A	21	26	anti-parallel
Strand 4	A	72	78	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	244	249	anti-parallel
Strand 3	A	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	244	249	anti-parallel
Strand 3	A	189	192	anti-parallel
Strand 4	A	179	181	anti-parallel
Strand 5	A	268	270	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	199	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	544	545	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	448	first strand
Strand 2	A	384	389	parallel
Strand 3	A	473	479	parallel
Strand 4	A	500	506	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JPX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPX