Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JPZ entry

There are 2 chains in PDB entry 8JPZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	GLN 581
B	GLY 1	GLN 581

There are 56 helices in PDB entry 8JPZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed alpha
Helix 2	AA2	A	9	13	Right-handed 310
Helix 3	AA3	A	26	38	Right-handed alpha
Helix 4	AA4	A	57	62	Right-handed alpha
Helix 5	AA5	A	63	66	Right-handed 310
Helix 6	AA6	A	99	104	Right-handed 310
Helix 7	AA7	A	113	123	Right-handed alpha
Helix 8	AA8	A	130	141	Right-handed alpha
Helix 9	AA9	A	148	155	Right-handed alpha
Helix 10	AB1	A	159	163	Right-handed 310
Helix 11	AB2	A	182	193	Right-handed alpha
Helix 12	AB3	A	225	231	Right-handed alpha
Helix 13	AB4	A	291	299	Right-handed alpha
Helix 14	AB5	A	303	308	Right-handed alpha
Helix 15	AB6	A	309	311	Right-handed 310
Helix 16	AB7	A	338	341	Right-handed 310
Helix 17	AB8	A	352	357	Right-handed alpha
Helix 18	AB9	A	359	370	Right-handed alpha
Helix 19	AC1	A	370	381	Right-handed alpha
Helix 20	AC2	A	386	403	Right-handed alpha
Helix 21	AC3	A	440	444	Right-handed 310
Helix 22	AC4	A	455	474	Right-handed alpha
Helix 23	AC5	A	475	480	Right-handed 310
Helix 24	AC6	A	488	492	Right-handed 310
Helix 25	AC7	A	497	505	Right-handed alpha
Helix 26	AC8	A	506	508	Right-handed 310
Helix 27	AC9	A	523	527	Right-handed 310
Helix 28	AD1	A	558	579	Right-handed alpha
Helix 29	AD2	B	2	6	Right-handed alpha
Helix 30	AD3	B	9	13	Right-handed 310
Helix 31	AD4	B	26	37	Right-handed alpha
Helix 32	AD5	B	57	62	Right-handed alpha
Helix 33	AD6	B	63	66	Right-handed 310
Helix 34	AD7	B	99	104	Right-handed 310
Helix 35	AD8	B	113	123	Right-handed alpha
Helix 36	AD9	B	130	141	Right-handed alpha
Helix 37	AE1	B	148	155	Right-handed alpha
Helix 38	AE2	B	159	163	Right-handed 310
Helix 39	AE3	B	182	193	Right-handed alpha
Helix 40	AE4	B	225	231	Right-handed alpha
Helix 41	AE5	B	291	299	Right-handed alpha
Helix 42	AE6	B	303	308	Right-handed alpha
Helix 43	AE7	B	309	311	Right-handed 310
Helix 44	AE8	B	338	341	Right-handed 310
Helix 45	AE9	B	352	357	Right-handed alpha
Helix 46	AF1	B	359	370	Right-handed alpha
Helix 47	AF2	B	370	381	Right-handed alpha
Helix 48	AF3	B	386	403	Right-handed alpha
Helix 49	AF4	B	440	444	Right-handed 310
Helix 50	AF5	B	455	474	Right-handed alpha
Helix 51	AF6	B	475	480	Right-handed 310
Helix 52	AF7	B	488	492	Right-handed 310
Helix 53	AF8	B	497	505	Right-handed alpha
Helix 54	AF9	B	506	508	Right-handed 310
Helix 55	AG1	B	523	527	Right-handed 310
Helix 56	AG2	B	558	580	Right-handed alpha

There are 15 sheets in PDB entry 8JPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	244	first strand
Strand 2	A	44	48	parallel
Strand 3	A	17	23	parallel
Strand 4	A	273	285	parallel
Strand 5	A	262	270	anti-parallel
Strand 6	A	247	253	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	244	first strand
Strand 2	A	44	48	parallel
Strand 3	A	17	23	parallel
Strand 4	A	273	285	parallel
Strand 5	A	542	544	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	82	first strand
Strand 2	A	89	92	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	169	171	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	345	351	anti-parallel
Strand 3	A	407	414	anti-parallel
Strand 4	A	418	425	anti-parallel
Strand 5	A	328	336	anti-parallel
Strand 6	A	482	487	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	345	351	anti-parallel
Strand 3	A	407	414	anti-parallel
Strand 4	A	418	425	anti-parallel
Strand 5	A	328	336	anti-parallel
Strand 6	A	510	511	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	316	317	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	436	first strand
Strand 2	A	446	449	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	44	47	parallel
Strand 3	B	17	23	parallel
Strand 4	B	273	285	parallel
Strand 5	B	262	270	anti-parallel
Strand 6	B	247	253	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	44	47	parallel
Strand 3	B	17	23	parallel
Strand 4	B	273	285	parallel
Strand 5	B	542	544	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	89	92	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	169	171	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	345	351	anti-parallel
Strand 3	B	407	414	anti-parallel
Strand 4	B	419	425	anti-parallel
Strand 5	B	328	336	anti-parallel
Strand 6	B	482	487	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	345	351	anti-parallel
Strand 3	B	407	414	anti-parallel
Strand 4	B	419	425	anti-parallel
Strand 5	B	328	336	anti-parallel
Strand 6	B	510	511	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	432	436	anti-parallel
Strand 3	B	446	449	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JPZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JPZ