Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JQ5 entry

There are 3 chains in PDB entry 8JQ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 420
B
 MET 1ASP 421
C
 MET 1TRP 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 8JQ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 20Right-handed alpha
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
42 45Right-handed 310
Helix 4
AA4
A
73 86Right-handed alpha
Helix 5
AA5
A
99 101Right-handed 310
Helix 6
AA6
A
113 116Right-handed 310
Helix 7
AA7
A
117 128Right-handed alpha
Helix 8
AA8
A
153 179Right-handed alpha
Helix 9
AA9
A
199 214Right-handed alpha
Helix 10
AB1
A
243 255Right-handed alpha
Helix 11
AB2
A
270 273Right-handed 310
Helix 12
AB3
A
274 279Right-handed alpha
Helix 13
AB4
A
304 317Right-handed alpha
Helix 14
AB5
A
319 321Right-handed 310
Helix 15
AB6
A
335 356Right-handed alpha
Helix 16
AB7
A
358 368Right-handed alpha
Helix 17
AB8
A
370 382Right-handed alpha
Helix 18
AB9
A
385 397Right-handed alpha
Helix 19
AC1
A
401 403Right-handed 310
Helix 20
AC2
A
404 416Right-handed alpha
Helix 21
AC3
A
417 420Right-handed 310
Helix 22
AC4
B
3 21Right-handed alpha
Helix 23
AC5
B
24 33Right-handed alpha
Helix 24
AC6
B
42 45Right-handed 310
Helix 25
AC7
B
73 87Right-handed alpha
Helix 26
AC8
B
99 101Right-handed 310
Helix 27
AC9
B
113 116Right-handed 310
Helix 28
AD1
B
117 128Right-handed alpha
Helix 29
AD2
B
153 179Right-handed alpha
Helix 30
AD3
B
199 214Right-handed alpha
Helix 31
AD4
B
243 255Right-handed alpha
Helix 32
AD5
B
270 273Right-handed 310
Helix 33
AD6
B
274 279Right-handed alpha
Helix 34
AD7
B
304 317Right-handed alpha
Helix 35
AD8
B
319 321Right-handed 310
Helix 36
AD9
B
335 356Right-handed alpha
Helix 37
AE1
B
358 368Right-handed alpha
Helix 38
AE2
B
370 382Right-handed alpha
Helix 39
AE3
B
385 397Right-handed alpha
Helix 40
AE4
B
401 403Right-handed 310
Helix 41
AE5
B
404 416Right-handed alpha
Helix 42
AE6
B
417 420Right-handed 310
Helix 43
AE7
C
3 20Right-handed alpha
Helix 44
AE8
C
24 34Right-handed alpha
Helix 45
AE9
C
42 45Right-handed 310
Helix 46
AF1
C
73 87Right-handed alpha
Helix 47
AF2
C
99 101Right-handed 310
Helix 48
AF3
C
113 116Right-handed 310
Helix 49
AF4
C
117 128Right-handed alpha
Helix 50
AF5
C
153 179Right-handed alpha
Helix 51
AF6
C
199 214Right-handed alpha
Helix 52
AF7
C
243 255Right-handed alpha
Helix 53
AF8
C
270 273Right-handed 310
Helix 54
AF9
C
274 279Right-handed alpha
Helix 55
AG1
C
304 317Right-handed alpha
Helix 56
AG2
C
319 321Right-handed 310
Helix 57
AG3
C
335 356Right-handed alpha
Helix 58
AG4
C
358 368Right-handed alpha
Helix 59
AG5
C
370 382Right-handed alpha
Helix 60
AG6
C
385 397Right-handed alpha
Helix 61
AG7
C
401 403Right-handed 310
Helix 62
AG8
C
404 416Right-handed alpha
Helix 63
AG9
C
417 420Right-handed 310
Helix 64
AH1
D
3 21Right-handed alpha
Helix 65
AH2
D
24 34Right-handed alpha
Helix 66
AH3
D
42 45Right-handed 310
Helix 67
AH4
D
73 86Right-handed alpha
Helix 68
AH5
D
99 101Right-handed 310
Helix 69
AH6
D
113 116Right-handed 310
Helix 70
AH7
D
117 128Right-handed alpha
Helix 71
AH8
D
153 179Right-handed alpha
Helix 72
AH9
D
199 214Right-handed alpha
Helix 73
AI1
D
243 255Right-handed alpha
Helix 74
AI2
D
270 273Right-handed 310
Helix 75
AI3
D
274 279Right-handed alpha
Helix 76
AI4
D
304 317Right-handed alpha
Helix 77
AI5
D
319 321Right-handed 310
Helix 78
AI6
D
335 356Right-handed alpha
Helix 79
AI7
D
358 368Right-handed alpha
Helix 80
AI8
D
370 382Right-handed alpha
Helix 81
AI9
D
385 397Right-handed alpha
Helix 82
AJ1
D
401 403Right-handed 310
Helix 83
AJ2
D
404 416Right-handed alpha
Helix 84
AJ3
D
419 423Right-handed 310
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There are 8 sheets in PDB entry 8JQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
93 97parallel
Strand 3
A
130 134parallel
Strand 4
A
182 187parallel
Strand 5
A
223 228parallel
Strand 6
A
257 261parallel
Strand 7
A
285 289parallel
Strand 8
A
323 327parallel
Strand 9
A
37 40parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
239 240anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
93 97parallel
Strand 3
B
130 134parallel
Strand 4
B
182 187parallel
Strand 5
B
223 228parallel
Strand 6
B
257 261parallel
Strand 7
B
285 289parallel
Strand 8
B
323 327parallel
Strand 9
B
37 40parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
239 240anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 40first strand
Strand 2
C
93 97parallel
Strand 3
C
130 134parallel
Strand 4
C
182 187parallel
Strand 5
C
223 228parallel
Strand 6
C
257 261parallel
Strand 7
C
285 289parallel
Strand 8
C
323 327parallel
Strand 9
C
37 40parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 192first strand
Strand 2
C
239 240anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 40first strand
Strand 2
D
93 97parallel
Strand 3
D
130 134parallel
Strand 4
D
182 187parallel
Strand 5
D
223 228parallel
Strand 6
D
257 261parallel
Strand 7
D
285 289parallel
Strand 8
D
323 327parallel
Strand 9
D
37 40parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
191 192first strand
Strand 2
D
239 240anti-parallel
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