Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JQ9 entry

There are 4 chains in PDB entry 8JQ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLY 578
C	MET 1	GLY 578
D	MET 1	GLY 578
A	MET 1	GLY 578

There are 74 helices in PDB entry 8JQ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	31	47	Right-handed alpha
Helix 2	AA2	B	47	52	Right-handed alpha
Helix 3	AA3	B	84	91	Right-handed alpha
Helix 4	AA4	B	144	147	Right-handed 310
Helix 5	AA5	B	295	309	Right-handed alpha
Helix 6	AA6	B	321	326	Right-handed 310
Helix 7	AA7	B	352	356	Right-handed 310
Helix 8	AA8	B	358	370	Right-handed alpha
Helix 9	AA9	B	380	395	Right-handed alpha
Helix 10	AB1	B	397	402	Right-handed alpha
Helix 11	AB2	B	413	423	Right-handed alpha
Helix 12	AB3	B	447	457	Right-handed alpha
Helix 13	AB4	B	476	493	Right-handed alpha
Helix 14	AB5	B	493	503	Right-handed alpha
Helix 15	AB6	B	511	528	Right-handed alpha
Helix 16	AB7	B	532	540	Right-handed alpha
Helix 17	AB8	B	540	551	Right-handed alpha
Helix 18	AB9	B	553	562	Right-handed alpha
Helix 19	AC1	B	563	565	Right-handed 310
Helix 20	AC2	B	566	574	Right-handed alpha
Helix 21	AC3	C	31	47	Right-handed alpha
Helix 22	AC4	C	47	52	Right-handed alpha
Helix 23	AC5	C	83	91	Right-handed alpha
Helix 24	AC6	C	144	147	Right-handed 310
Helix 25	AC7	C	295	309	Right-handed alpha
Helix 26	AC8	C	321	326	Right-handed 310
Helix 27	AC9	C	352	356	Right-handed 310
Helix 28	AD1	C	358	370	Right-handed alpha
Helix 29	AD2	C	380	395	Right-handed alpha
Helix 30	AD3	C	413	423	Right-handed alpha
Helix 31	AD4	C	447	457	Right-handed alpha
Helix 32	AD5	C	476	493	Right-handed alpha
Helix 33	AD6	C	493	503	Right-handed alpha
Helix 34	AD7	C	511	528	Right-handed alpha
Helix 35	AD8	C	532	540	Right-handed alpha
Helix 36	AD9	C	540	551	Right-handed alpha
Helix 37	AE1	C	553	562	Right-handed alpha
Helix 38	AE2	C	566	574	Right-handed alpha
Helix 39	AE3	D	31	47	Right-handed alpha
Helix 40	AE4	D	47	52	Right-handed alpha
Helix 41	AE5	D	83	91	Right-handed alpha
Helix 42	AE6	D	295	309	Right-handed alpha
Helix 43	AE7	D	321	326	Right-handed 310
Helix 44	AE8	D	352	356	Right-handed 310
Helix 45	AE9	D	358	370	Right-handed alpha
Helix 46	AF1	D	380	395	Right-handed alpha
Helix 47	AF2	D	413	423	Right-handed alpha
Helix 48	AF3	D	447	457	Right-handed alpha
Helix 49	AF4	D	476	493	Right-handed alpha
Helix 50	AF5	D	493	503	Right-handed alpha
Helix 51	AF6	D	511	528	Right-handed alpha
Helix 52	AF7	D	533	539	Right-handed alpha
Helix 53	AF8	D	540	551	Right-handed alpha
Helix 54	AF9	D	553	562	Right-handed alpha
Helix 55	AG1	D	563	565	Right-handed 310
Helix 56	AG2	D	566	574	Right-handed alpha
Helix 57	AG3	A	31	47	Right-handed alpha
Helix 58	AG4	A	47	52	Right-handed alpha
Helix 59	AG5	A	84	91	Right-handed alpha
Helix 60	AG6	A	144	147	Right-handed 310
Helix 61	AG7	A	295	309	Right-handed alpha
Helix 62	AG8	A	321	326	Right-handed 310
Helix 63	AG9	A	352	356	Right-handed 310
Helix 64	AH1	A	358	370	Right-handed alpha
Helix 65	AH2	A	380	395	Right-handed alpha
Helix 66	AH3	A	413	423	Right-handed alpha
Helix 67	AH4	A	447	457	Right-handed alpha
Helix 68	AH5	A	476	493	Right-handed alpha
Helix 69	AH6	A	493	503	Right-handed alpha
Helix 70	AH7	A	511	528	Right-handed alpha
Helix 71	AH8	A	532	540	Right-handed alpha
Helix 72	AH9	A	540	551	Right-handed alpha
Helix 73	AI1	A	553	562	Right-handed alpha
Helix 74	AI2	A	566	574	Right-handed alpha

There are 16 sheets in PDB entry 8JQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	5	8	anti-parallel
Strand 3	B	70	74	anti-parallel
Strand 4	B	106	110	anti-parallel
Strand 5	B	123	127	anti-parallel
Strand 6	B	134	135	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	154	first strand
Strand 2	B	282	288	parallel
Strand 3	B	315	318	parallel
Strand 4	B	25	29	parallel
Strand 5	B	331	336	parallel
Strand 6	B	344	349	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	407	first strand
Strand 2	B	374	378	parallel
Strand 3	B	426	432	parallel
Strand 4	B	505	508	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	437	first strand
Strand 2	B	444	446	anti-parallel
Strand 3	B	465	466	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	5	8	anti-parallel
Strand 3	C	70	74	anti-parallel
Strand 4	C	106	110	anti-parallel
Strand 5	C	123	127	anti-parallel
Strand 6	C	134	135	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	282	288	parallel
Strand 3	C	315	318	parallel
Strand 4	C	25	29	parallel
Strand 5	C	331	336	parallel
Strand 6	C	344	349	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	407	first strand
Strand 2	C	374	378	parallel
Strand 3	C	426	431	parallel
Strand 4	C	505	507	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	437	first strand
Strand 2	C	444	446	anti-parallel
Strand 3	C	465	466	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	5	8	anti-parallel
Strand 3	D	70	74	anti-parallel
Strand 4	D	106	111	anti-parallel
Strand 5	D	122	127	anti-parallel
Strand 6	D	134	135	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	282	288	parallel
Strand 3	D	315	318	parallel
Strand 4	D	25	29	parallel
Strand 5	D	331	336	parallel
Strand 6	D	344	349	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	407	first strand
Strand 2	D	374	378	parallel
Strand 3	D	426	431	parallel
Strand 4	D	505	507	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	436	437	first strand
Strand 2	D	444	446	anti-parallel
Strand 3	D	465	466	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	5	8	anti-parallel
Strand 3	A	70	74	anti-parallel
Strand 4	A	106	110	anti-parallel
Strand 5	A	123	127	anti-parallel
Strand 6	A	134	135	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	282	288	parallel
Strand 3	A	315	318	parallel
Strand 4	A	25	29	parallel
Strand 5	A	331	336	parallel
Strand 6	A	344	349	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	407	first strand
Strand 2	A	374	378	parallel
Strand 3	A	426	432	parallel
Strand 4	A	505	508	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	437	first strand
Strand 2	A	444	446	anti-parallel
Strand 3	A	465	466	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JQ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQ9