Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JQB entry

There are 8 chains in PDB entry 8JQB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	GLY 578
A	MET 1	GLY 578
B	MET 1	GLY 578
D	MET 1	GLY 578
E	MET 1	ILE 499
F	MET 1	ILE 499
G	MET 1	ILE 499
H	MET 1	ILE 499

There are180 helices in PDB entry 8JQB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	31	47	Right-handed alpha
Helix 2	AA2	C	47	52	Right-handed alpha
Helix 3	AA3	C	56	64	Right-handed 310
Helix 4	AA4	C	84	94	Right-handed alpha
Helix 5	AA5	C	143	148	Right-handed alpha
Helix 6	AA6	C	268	277	Right-handed alpha
Helix 7	AA7	C	295	308	Right-handed alpha
Helix 8	AA8	C	321	325	Right-handed 310
Helix 9	AA9	C	352	356	Right-handed 310
Helix 10	AB1	C	358	370	Right-handed alpha
Helix 11	AB2	C	380	394	Right-handed alpha
Helix 12	AB3	C	413	423	Right-handed alpha
Helix 13	AB4	C	448	458	Right-handed alpha
Helix 14	AB5	C	476	493	Right-handed alpha
Helix 15	AB6	C	493	503	Right-handed alpha
Helix 16	AB7	C	511	518	Right-handed alpha
Helix 17	AB8	C	521	529	Right-handed alpha
Helix 18	AB9	C	532	538	Right-handed alpha
Helix 19	AC1	C	540	552	Right-handed alpha
Helix 20	AC2	C	555	562	Right-handed alpha
Helix 21	AC3	C	563	565	Right-handed 310
Helix 22	AC4	C	566	574	Right-handed alpha
Helix 23	AC5	A	31	47	Right-handed alpha
Helix 24	AC6	A	47	52	Right-handed alpha
Helix 25	AC7	A	56	64	Right-handed 310
Helix 26	AC8	A	84	94	Right-handed alpha
Helix 27	AC9	A	143	148	Right-handed alpha
Helix 28	AD1	A	268	277	Right-handed alpha
Helix 29	AD2	A	295	308	Right-handed alpha
Helix 30	AD3	A	321	325	Right-handed 310
Helix 31	AD4	A	358	370	Right-handed alpha
Helix 32	AD5	A	380	394	Right-handed alpha
Helix 33	AD6	A	413	423	Right-handed alpha
Helix 34	AD7	A	448	458	Right-handed alpha
Helix 35	AD8	A	476	493	Right-handed alpha
Helix 36	AD9	A	493	503	Right-handed alpha
Helix 37	AE1	A	511	518	Right-handed alpha
Helix 38	AE2	A	521	529	Right-handed alpha
Helix 39	AE3	A	532	538	Right-handed alpha
Helix 40	AE4	A	540	552	Right-handed alpha
Helix 41	AE5	A	555	562	Right-handed alpha
Helix 42	AE6	A	563	565	Right-handed 310
Helix 43	AE7	A	566	574	Right-handed alpha
Helix 44	AE8	B	31	47	Right-handed alpha
Helix 45	AE9	B	47	52	Right-handed alpha
Helix 46	AF1	B	56	64	Right-handed 310
Helix 47	AF2	B	84	94	Right-handed alpha
Helix 48	AF3	B	143	148	Right-handed alpha
Helix 49	AF4	B	268	277	Right-handed alpha
Helix 50	AF5	B	295	308	Right-handed alpha
Helix 51	AF6	B	321	325	Right-handed 310
Helix 52	AF7	B	358	371	Right-handed alpha
Helix 53	AF8	B	380	394	Right-handed alpha
Helix 54	AF9	B	413	423	Right-handed alpha
Helix 55	AG1	B	448	458	Right-handed alpha
Helix 56	AG2	B	476	493	Right-handed alpha
Helix 57	AG3	B	493	503	Right-handed alpha
Helix 58	AG4	B	511	518	Right-handed alpha
Helix 59	AG5	B	521	529	Right-handed alpha
Helix 60	AG6	B	532	538	Right-handed alpha
Helix 61	AG7	B	540	552	Right-handed alpha
Helix 62	AG8	B	555	562	Right-handed alpha
Helix 63	AG9	B	563	565	Right-handed 310
Helix 64	AH1	B	566	574	Right-handed alpha
Helix 65	AH2	D	31	47	Right-handed alpha
Helix 66	AH3	D	47	52	Right-handed alpha
Helix 67	AH4	D	56	64	Right-handed 310
Helix 68	AH5	D	83	94	Right-handed alpha
Helix 69	AH6	D	143	148	Right-handed alpha
Helix 70	AH7	D	268	277	Right-handed alpha
Helix 71	AH8	D	295	308	Right-handed alpha
Helix 72	AH9	D	321	325	Right-handed 310
Helix 73	AI1	D	358	370	Right-handed alpha
Helix 74	AI2	D	380	394	Right-handed alpha
Helix 75	AI3	D	413	423	Right-handed alpha
Helix 76	AI4	D	448	458	Right-handed alpha
Helix 77	AI5	D	476	493	Right-handed alpha
Helix 78	AI6	D	493	503	Right-handed alpha
Helix 79	AI7	D	511	518	Right-handed alpha
Helix 80	AI8	D	521	529	Right-handed alpha
Helix 81	AI9	D	532	538	Right-handed alpha
Helix 82	AJ1	D	540	552	Right-handed alpha
Helix 83	AJ2	D	555	562	Right-handed alpha
Helix 84	AJ3	D	563	565	Right-handed 310
Helix 85	AJ4	D	566	574	Right-handed alpha
Helix 86	AJ5	E	2	13	Right-handed alpha
Helix 87	AJ6	E	27	43	Right-handed alpha
Helix 88	AJ7	E	55	67	Right-handed alpha
Helix 89	AJ8	E	78	86	Right-handed alpha
Helix 90	AJ9	E	86	95	Right-handed alpha
Helix 91	AK1	E	114	125	Right-handed alpha
Helix 92	AK2	E	137	150	Right-handed alpha
Helix 93	AK3	E	150	160	Right-handed alpha
Helix 94	AK4	E	173	186	Right-handed alpha
Helix 95	AK5	E	211	215	Right-handed 310
Helix 96	AK6	E	236	243	Right-handed 310
Helix 97	AK7	E	269	279	Right-handed alpha
Helix 98	AK8	E	296	311	Right-handed alpha
Helix 99	AK9	E	320	324	Right-handed 310
Helix 100	AL1	E	328	342	Right-handed alpha
Helix 101	AL2	E	345	351	Right-handed alpha
Helix 102	AL3	E	361	373	Right-handed alpha
Helix 103	AL4	E	379	393	Right-handed alpha
Helix 104	AL5	E	399	410	Right-handed alpha
Helix 105	AL6	E	411	413	Right-handed 310
Helix 106	AL7	E	449	453	Right-handed 310
Helix 107	AL8	E	455	464	Right-handed alpha
Helix 108	AL9	E	476	490	Right-handed alpha
Helix 109	AM1	F	2	13	Right-handed alpha
Helix 110	AM2	F	27	43	Right-handed alpha
Helix 111	AM3	F	55	67	Right-handed alpha
Helix 112	AM4	F	78	86	Right-handed alpha
Helix 113	AM5	F	86	95	Right-handed alpha
Helix 114	AM6	F	114	125	Right-handed alpha
Helix 115	AM7	F	137	150	Right-handed alpha
Helix 116	AM8	F	150	160	Right-handed alpha
Helix 117	AM9	F	173	186	Right-handed alpha
Helix 118	AN1	F	211	215	Right-handed 310
Helix 119	AN2	F	236	243	Right-handed 310
Helix 120	AN3	F	269	279	Right-handed alpha
Helix 121	AN4	F	296	311	Right-handed alpha
Helix 122	AN5	F	320	324	Right-handed 310
Helix 123	AN6	F	328	342	Right-handed alpha
Helix 124	AN7	F	345	351	Right-handed alpha
Helix 125	AN8	F	361	372	Right-handed alpha
Helix 126	AN9	F	379	393	Right-handed alpha
Helix 127	AO1	F	399	410	Right-handed alpha
Helix 128	AO2	F	411	413	Right-handed 310
Helix 129	AO3	F	444	447	Right-handed 310
Helix 130	AO4	F	455	464	Right-handed alpha
Helix 131	AO5	F	476	490	Right-handed alpha
Helix 132	AO6	G	2	13	Right-handed alpha
Helix 133	AO7	G	27	43	Right-handed alpha
Helix 134	AO8	G	55	67	Right-handed alpha
Helix 135	AO9	G	78	86	Right-handed alpha
Helix 136	AP1	G	86	95	Right-handed alpha
Helix 137	AP2	G	114	125	Right-handed alpha
Helix 138	AP3	G	137	150	Right-handed alpha
Helix 139	AP4	G	150	160	Right-handed alpha
Helix 140	AP5	G	173	186	Right-handed alpha
Helix 141	AP6	G	211	216	Right-handed 310
Helix 142	AP7	G	236	242	Right-handed 310
Helix 143	AP8	G	247	252	Right-handed 310
Helix 144	AP9	G	269	279	Right-handed alpha
Helix 145	AQ1	G	296	311	Right-handed alpha
Helix 146	AQ2	G	320	324	Right-handed 310
Helix 147	AQ3	G	328	342	Right-handed alpha
Helix 148	AQ4	G	345	351	Right-handed alpha
Helix 149	AQ5	G	361	372	Right-handed alpha
Helix 150	AQ6	G	379	393	Right-handed alpha
Helix 151	AQ7	G	399	410	Right-handed alpha
Helix 152	AQ8	G	411	413	Right-handed 310
Helix 153	AQ9	G	444	447	Right-handed 310
Helix 154	AR1	G	449	453	Right-handed 310
Helix 155	AR2	G	455	464	Right-handed alpha
Helix 156	AR3	G	476	490	Right-handed alpha
Helix 157	AR4	H	2	13	Right-handed alpha
Helix 158	AR5	H	27	43	Right-handed alpha
Helix 159	AR6	H	55	67	Right-handed alpha
Helix 160	AR7	H	78	86	Right-handed alpha
Helix 161	AR8	H	86	95	Right-handed alpha
Helix 162	AR9	H	114	125	Right-handed alpha
Helix 163	AS1	H	137	150	Right-handed alpha
Helix 164	AS2	H	150	160	Right-handed alpha
Helix 165	AS3	H	173	186	Right-handed alpha
Helix 166	AS4	H	211	215	Right-handed 310
Helix 167	AS5	H	236	242	Right-handed 310
Helix 168	AS6	H	269	279	Right-handed alpha
Helix 169	AS7	H	296	311	Right-handed alpha
Helix 170	AS8	H	320	324	Right-handed 310
Helix 171	AS9	H	328	342	Right-handed alpha
Helix 172	AT1	H	345	351	Right-handed alpha
Helix 173	AT2	H	361	372	Right-handed alpha
Helix 174	AT3	H	379	393	Right-handed alpha
Helix 175	AT4	H	399	410	Right-handed alpha
Helix 176	AT5	H	411	413	Right-handed 310
Helix 177	AT6	H	443	447	Right-handed 310
Helix 178	AT7	H	449	453	Right-handed 310
Helix 179	AT8	H	455	464	Right-handed alpha
Helix 180	AT9	H	476	490	Right-handed alpha

There are 33 sheets in PDB entry 8JQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	3	8	anti-parallel
Strand 3	C	69	75	anti-parallel
Strand 4	C	105	113	anti-parallel
Strand 5	C	120	127	anti-parallel
Strand 6	C	134	135	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	282	288	parallel
Strand 3	C	314	318	parallel
Strand 4	C	25	29	parallel
Strand 5	C	331	336	parallel
Strand 6	C	344	349	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	407	first strand
Strand 2	C	374	378	parallel
Strand 3	C	426	431	parallel
Strand 4	C	505	507	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	437	first strand
Strand 2	C	444	447	anti-parallel
Strand 3	C	465	466	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	3	8	anti-parallel
Strand 3	A	69	75	anti-parallel
Strand 4	A	105	113	anti-parallel
Strand 5	A	120	127	anti-parallel
Strand 6	A	134	135	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	282	288	parallel
Strand 3	A	314	318	parallel
Strand 4	A	25	29	parallel
Strand 5	A	331	336	parallel
Strand 6	A	344	349	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	407	first strand
Strand 2	A	374	378	parallel
Strand 3	A	426	431	parallel
Strand 4	A	505	507	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	444	447	anti-parallel
Strand 3	A	465	466	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	3	8	anti-parallel
Strand 3	B	69	75	anti-parallel
Strand 4	B	105	113	anti-parallel
Strand 5	B	120	127	anti-parallel
Strand 6	B	134	135	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	154	first strand
Strand 2	B	282	288	parallel
Strand 3	B	314	318	parallel
Strand 4	B	25	29	parallel
Strand 5	B	331	336	parallel
Strand 6	B	344	349	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	407	first strand
Strand 2	B	374	378	parallel
Strand 3	B	426	431	parallel
Strand 4	B	505	507	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	444	447	anti-parallel
Strand 3	B	465	466	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	3	8	anti-parallel
Strand 3	D	69	75	anti-parallel
Strand 4	D	105	113	anti-parallel
Strand 5	D	120	127	anti-parallel
Strand 6	D	134	135	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	282	288	parallel
Strand 3	D	314	318	parallel
Strand 4	D	25	29	parallel
Strand 5	D	331	336	parallel
Strand 6	D	344	349	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	407	first strand
Strand 2	D	374	378	parallel
Strand 3	D	426	431	parallel
Strand 4	D	505	507	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	444	447	anti-parallel
Strand 3	D	465	466	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	77	first strand
Strand 2	E	48	53	parallel
Strand 3	E	161	166	parallel
Strand 4	E	190	195	parallel
Strand 5	E	18	21	parallel
Strand 6	E	223	225	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	105	first strand
Strand 2	E	127	128	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	261	262	first strand
Strand 2	E	470	471	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	291	first strand
Strand 2	E	440	441	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	315	316	first strand
Strand 2	E	426	427	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	77	first strand
Strand 2	F	48	53	parallel
Strand 3	F	161	166	parallel
Strand 4	F	190	195	parallel
Strand 5	F	18	21	parallel
Strand 6	F	223	225	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	105	first strand
Strand 2	F	127	128	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	315	316	first strand
Strand 2	F	426	428	parallel
Strand 3	F	290	293	parallel
Strand 4	F	440	442	parallel
Strand 5	F	470	471	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	77	first strand
Strand 2	G	48	53	parallel
Strand 3	G	161	166	parallel
Strand 4	G	190	195	parallel
Strand 5	G	18	21	parallel
Strand 6	G	223	225	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	105	first strand
Strand 2	G	127	128	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	261	262	first strand
Strand 2	G	466	471	parallel
Strand 3	G	438	442	parallel
Strand 4	G	290	291	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	315	316	first strand
Strand 2	G	426	427	parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	74	77	first strand
Strand 2	H	48	53	parallel
Strand 3	H	161	166	parallel
Strand 4	H	190	195	parallel
Strand 5	H	18	21	parallel
Strand 6	H	223	225	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	105	first strand
Strand 2	H	127	128	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	261	262	first strand
Strand 2	H	470	471	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	290	291	first strand
Strand 2	H	440	441	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	315	316	first strand
Strand 2	H	426	427	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JQB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQB