Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JQF entry

There are 2 chains in PDB entry 8JQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1ASP 289
A
 ASN 2ASP 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 8JQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 7Right-handed alpha
Helix 2
AA2
B
26 40Right-handed alpha
Helix 3
AA3
B
53 64Right-handed alpha
Helix 4
AA4
B
89 97Right-handed 310
Helix 5
AA5
B
106 114Right-handed alpha
Helix 6
AA6
B
115 133Right-handed alpha
Helix 7
AA7
B
144 149Right-handed 310
Helix 8
AA8
B
150 165Right-handed alpha
Helix 9
AA9
B
171 178Right-handed alpha
Helix 10
AB1
B
183 188Right-handed 310
Helix 11
AB2
B
200 205Right-handed alpha
Helix 12
AB3
B
208 220Right-handed alpha
Helix 13
AB4
B
235 242Right-handed alpha
Helix 14
AB5
B
249 260Right-handed alpha
Helix 15
AB6
B
262 272Right-handed alpha
Helix 16
AB7
B
278 287Right-handed alpha
Helix 17
AB8
A
3 7Right-handed alpha
Helix 18
AB9
A
26 40Right-handed alpha
Helix 19
AC1
A
53 64Right-handed alpha
Helix 20
AC2
A
93 97Right-handed 310
Helix 21
AC3
A
106 114Right-handed alpha
Helix 22
AC4
A
115 133Right-handed alpha
Helix 23
AC5
A
144 149Right-handed 310
Helix 24
AC6
A
150 165Right-handed alpha
Helix 25
AC7
A
171 178Right-handed alpha
Helix 26
AC8
A
183 188Right-handed 310
Helix 27
AC9
A
200 205Right-handed alpha
Helix 28
AD1
A
208 219Right-handed alpha
Helix 29
AD2
A
235 242Right-handed alpha
Helix 30
AD3
A
249 261Right-handed alpha
Helix 31
AD4
A
262 273Right-handed alpha
Helix 32
AD5
A
278 289Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8JQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
68 73parallel
Strand 3
B
44 47parallel
Strand 4
B
14 23parallel
Strand 5
B
223 229parallel
Strand 6
B
195 197parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
68 73parallel
Strand 3
B
44 47parallel
Strand 4
B
14 23parallel
Strand 5
B
275 276parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
68 73parallel
Strand 3
A
44 47parallel
Strand 4
A
14 23parallel
Strand 5
A
223 229parallel
Strand 6
A
195 197parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
68 73parallel
Strand 3
A
44 47parallel
Strand 4
A
14 23parallel
Strand 5
A
275 276parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il