Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JQG entry

There is 1 chain in PDB entry 8JQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10LEU 1190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8JQG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
66 68Right-handed 310
Helix 3
AA3
A
115 136Right-handed alpha
Helix 4
AA4
A
137 154Right-handed alpha
Helix 5
AA5
A
162 170Right-handed alpha
Helix 6
AA6
A
181 191Right-handed alpha
Helix 7
AA7
A
198 221Right-handed alpha
Helix 8
AA8
A
242 253Right-handed alpha
Helix 9
AA9
A
257 260Right-handed 310
Helix 10
AB1
A
261 274Right-handed alpha
Helix 11
AB2
A
287 295Right-handed alpha
Helix 12
AB3
A
303 307Right-handed 310
Helix 13
AB4
A
310 315Right-handed 310
Helix 14
AB5
A
317 319Right-handed 310
Helix 15
AB6
A
341 352Right-handed alpha
Helix 16
AB7
A
382 393Right-handed alpha
Helix 17
AB8
A
410 426Right-handed alpha
Helix 18
AB9
A
427 429Right-handed 310
Helix 19
AC1
A
539 554Right-handed alpha
Helix 20
AC2
A
609 620Right-handed alpha
Helix 21
AC3
A
639 644Right-handed 310
Helix 22
AC4
A
652 663Right-handed alpha
Helix 23
AC5
A
712 722Right-handed alpha
Helix 24
AC6
A
736 746Right-handed alpha
Helix 25
AC7
A
835 843Right-handed alpha
Helix 26
AC8
A
845 849Right-handed 310
Helix 27
AC9
A
892 908Right-handed alpha
Helix 28
AD1
A
927 934Right-handed alpha
Helix 29
AD2
A
960 970Right-handed alpha
Helix 30
AD3
A
970 979Right-handed alpha
Helix 31
AD4
A
999 1005Right-handed alpha
Helix 32
AD5
A
1018 1034Right-handed alpha
Helix 33
AD6
A
1040 1045Right-handed alpha
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There are 13 sheets in PDB entry 8JQG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
35 46anti-parallel
Strand 3
A
26 32anti-parallel
Strand 4
A
107 112anti-parallel
Strand 5
A
95 100anti-parallel
Strand 6
A
70 75anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
285 286anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
938 939first strand
Strand 2
A
954 959parallel
Strand 3
A
982 986parallel
Strand 4
A
1009 1012parallel
Strand 5
A
321 326parallel
Strand 6
A
1036 1038anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
401 405parallel
Strand 3
A
451 454parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
369 370anti-parallel
Strand 3
A
380 381anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 484first strand
Strand 2
A
491 499anti-parallel
Strand 3
A
502 508anti-parallel
Strand 4
A
851 854anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 565first strand
Strand 2
A
573 577anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 593first strand
Strand 2
A
596 601anti-parallel
Strand 3
A
605 607anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 624first strand
Strand 2
A
627 629anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 648first strand
Strand 2
A
668 673parallel
Strand 3
A
680 686anti-parallel
Strand 4
A
689 698anti-parallel
Strand 5
A
701 704anti-parallel
Strand 6
A
708 710anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 648first strand
Strand 2
A
668 673parallel
Strand 3
A
733 734parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1124first strand
Strand 2
A
1061 1071anti-parallel
Strand 3
A
1179 1188anti-parallel
Strand 4
A
1161 1165anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1097 1100first strand
Strand 2
A
1083 1090anti-parallel
Strand 3
A
1131 1139anti-parallel
Strand 4
A
1145 1154anti-parallel
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