Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JQH entry

There is 1 chain in PDB entry 8JQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10LEU 1253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 8JQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
79 83Right-handed 310
Helix 3
AA3
A
84 90Right-handed alpha
Helix 4
AA4
A
91 93Right-handed 310
Helix 5
AA5
A
115 136Right-handed alpha
Helix 6
AA6
A
137 154Right-handed alpha
Helix 7
AA7
A
163 173Right-handed alpha
Helix 8
AA8
A
179 191Right-handed alpha
Helix 9
AA9
A
199 214Right-handed alpha
Helix 10
AB1
A
217 223Right-handed alpha
Helix 11
AB2
A
226 230Right-handed 310
Helix 12
AB3
A
242 253Right-handed alpha
Helix 13
AB4
A
257 260Right-handed 310
Helix 14
AB5
A
261 274Right-handed alpha
Helix 15
AB6
A
286 295Right-handed alpha
Helix 16
AB7
A
296 300Right-handed 310
Helix 17
AB8
A
303 307Right-handed 310
Helix 18
AB9
A
310 314Right-handed 310
Helix 19
AC1
A
317 319Right-handed 310
Helix 20
AC2
A
341 352Right-handed alpha
Helix 21
AC3
A
382 393Right-handed alpha
Helix 22
AC4
A
410 425Right-handed alpha
Helix 23
AC5
A
426 429Right-handed 310
Helix 24
AC6
A
443 448Right-handed 310
Helix 25
AC7
A
510 513Right-handed 310
Helix 26
AC8
A
539 550Right-handed alpha
Helix 27
AC9
A
609 620Right-handed alpha
Helix 28
AD1
A
639 644Right-handed 310
Helix 29
AD2
A
652 663Right-handed alpha
Helix 30
AD3
A
712 721Right-handed alpha
Helix 31
AD4
A
736 743Right-handed alpha
Helix 32
AD5
A
830 843Right-handed alpha
Helix 33
AD6
A
892 909Right-handed alpha
Helix 34
AD7
A
927 932Right-handed alpha
Helix 35
AD8
A
960 970Right-handed alpha
Helix 36
AD9
A
970 981Right-handed alpha
Helix 37
AE1
A
999 1005Right-handed alpha
Helix 38
AE2
A
1018 1034Right-handed alpha
Helix 39
AE3
A
1040 1045Right-handed alpha
Helix 40
AE4
A
1156 1158Right-handed 310
Helix 41
AE5
A
1190 1217Right-handed alpha
Helix 42
AE6
A
1230 1253Right-handed alpha
Back to top of page

There are 17 sheets in PDB entry 8JQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
26 31anti-parallel
Strand 5
A
107 112anti-parallel
Strand 6
A
95 100anti-parallel
Strand 7
A
70 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
196 198anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
369 370anti-parallel
Strand 3
A
355 361anti-parallel
Strand 4
A
321 326parallel
Strand 5
A
1009 1011parallel
Strand 6
A
982 986parallel
Strand 7
A
954 959parallel
Strand 8
A
938 939parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 454first strand
Strand 2
A
401 408parallel
Strand 3
A
355 361parallel
Strand 4
A
321 326parallel
Strand 5
A
1036 1038anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 854first strand
Strand 2
A
502 508anti-parallel
Strand 3
A
491 498anti-parallel
Strand 4
A
478 484anti-parallel
Strand 5
A
886 889anti-parallel
Strand 6
A
873 878anti-parallel
Strand 7
A
858 863anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 565first strand
Strand 2
A
573 579anti-parallel
Strand 3
A
582 583anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 565first strand
Strand 2
A
573 579anti-parallel
Strand 3
A
586 593anti-parallel
Strand 4
A
596 600anti-parallel
Strand 5
A
606 607anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 648first strand
Strand 2
A
668 672parallel
Strand 3
A
682 686anti-parallel
Strand 4
A
689 691anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 648first strand
Strand 2
A
668 672parallel
Strand 3
A
733 734parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 698first strand
Strand 2
A
701 704anti-parallel
Strand 3
A
708 710anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 726first strand
Strand 2
A
729 730anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
774 776first strand
Strand 2
A
824 826anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
797 801first strand
Strand 2
A
807 811anti-parallel
Strand 3
A
814 817anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1061 1065first strand
Strand 2
A
1120 1124anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1067 1071first strand
Strand 2
A
1174 1184anti-parallel
Strand 3
A
1161 1168anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1097 1100first strand
Strand 2
A
1083 1089anti-parallel
Strand 3
A
1131 1139anti-parallel
Strand 4
A
1145 1149anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1097 1100first strand
Strand 2
A
1083 1089anti-parallel
Strand 3
A
1131 1139anti-parallel
Strand 4
A
1153 1154anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il