Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JQI entry

There are 2 chains in PDB entry 8JQI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 10	LEU 1190
B	TYR 463	LEU 769

There are 43 helices in PDB entry 8JQI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	25	Right-handed alpha
Helix 2	AA2	A	115	136	Right-handed alpha
Helix 3	AA3	A	137	154	Right-handed alpha
Helix 4	AA4	A	163	173	Right-handed alpha
Helix 5	AA5	A	180	191	Right-handed alpha
Helix 6	AA6	A	199	223	Right-handed alpha
Helix 7	AA7	A	242	253	Right-handed alpha
Helix 8	AA8	A	256	260	Right-handed 310
Helix 9	AA9	A	261	274	Right-handed alpha
Helix 10	AB1	A	287	296	Right-handed alpha
Helix 11	AB2	A	297	300	Right-handed 310
Helix 12	AB3	A	303	307	Right-handed 310
Helix 13	AB4	A	311	315	Right-handed 310
Helix 14	AB5	A	317	319	Right-handed 310
Helix 15	AB6	A	341	352	Right-handed alpha
Helix 16	AB7	A	382	392	Right-handed alpha
Helix 17	AB8	A	410	426	Right-handed alpha
Helix 18	AB9	A	427	429	Right-handed 310
Helix 19	AC1	A	539	554	Right-handed alpha
Helix 20	AC2	A	609	620	Right-handed alpha
Helix 21	AC3	A	639	644	Right-handed 310
Helix 22	AC4	A	652	663	Right-handed alpha
Helix 23	AC5	A	712	722	Right-handed alpha
Helix 24	AC6	A	736	746	Right-handed alpha
Helix 25	AC7	A	835	843	Right-handed alpha
Helix 26	AC8	A	845	849	Right-handed 310
Helix 27	AC9	A	856	858	Right-handed 310
Helix 28	AD1	A	892	908	Right-handed alpha
Helix 29	AD2	A	927	934	Right-handed alpha
Helix 30	AD3	A	960	970	Right-handed alpha
Helix 31	AD4	A	970	979	Right-handed alpha
Helix 32	AD5	A	999	1005	Right-handed alpha
Helix 33	AD6	A	1018	1034	Right-handed alpha
Helix 34	AD7	A	1040	1045	Right-handed alpha
Helix 35	AD8	A	1156	1158	Right-handed 310
Helix 36	AD9	B	521	539	Right-handed alpha
Helix 37	AE1	B	568	575	Right-handed alpha
Helix 38	AE2	B	596	617	Right-handed alpha
Helix 39	AE3	B	668	674	Right-handed alpha
Helix 40	AE4	B	678	695	Right-handed alpha
Helix 41	AE5	B	705	715	Right-handed alpha
Helix 42	AE6	B	726	737	Right-handed alpha
Helix 43	AE7	B	746	762	Right-handed alpha

There are 17 sheets in PDB entry 8JQI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	55	first strand
Strand 2	A	35	46	anti-parallel
Strand 3	A	26	32	anti-parallel
Strand 4	A	107	112	anti-parallel
Strand 5	A	96	100	anti-parallel
Strand 6	A	70	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	162	first strand
Strand 2	A	196	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	285	286	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	938	939	first strand
Strand 2	A	954	959	parallel
Strand 3	A	982	986	parallel
Strand 4	A	1009	1012	parallel
Strand 5	A	321	326	parallel
Strand 6	A	1036	1038	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	358	first strand
Strand 2	A	401	405	parallel
Strand 3	A	451	454	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	369	370	anti-parallel
Strand 3	A	380	381	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	484	first strand
Strand 2	A	491	499	anti-parallel
Strand 3	A	502	508	anti-parallel
Strand 4	A	851	854	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	565	first strand
Strand 2	A	573	575	anti-parallel
Strand 3	A	587	588	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	579	first strand
Strand 2	A	582	584	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	593	first strand
Strand 2	A	596	601	anti-parallel
Strand 3	A	605	607	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	623	first strand
Strand 2	A	628	629	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	648	first strand
Strand 2	A	668	673	parallel
Strand 3	A	680	686	anti-parallel
Strand 4	A	689	698	anti-parallel
Strand 5	A	701	704	anti-parallel
Strand 6	A	708	710	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	648	first strand
Strand 2	A	668	673	parallel
Strand 3	A	733	734	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1124	first strand
Strand 2	A	1061	1071	anti-parallel
Strand 3	A	1174	1188	anti-parallel
Strand 4	A	1161	1168	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1098	1100	first strand
Strand 2	A	1083	1090	anti-parallel
Strand 3	A	1131	1139	anti-parallel
Strand 4	A	1145	1154	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	486	first strand
Strand 2	B	490	498	anti-parallel
Strand 3	B	508	516	anti-parallel
Strand 4	B	558	562	anti-parallel
Strand 5	B	547	551	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	631	first strand
Strand 2	B	637	639	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JQI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQI