Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JQK entry

There are 2 chains in PDB entry 8JQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5GLN 345
B
 ILE 4GLN 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8JQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
45 60Right-handed alpha
Helix 3
AA3
A
100 121Right-handed alpha
Helix 4
AA4
A
133 137Right-handed 310
Helix 5
AA5
A
155 165Right-handed alpha
Helix 6
AA6
A
171 196Right-handed alpha
Helix 7
AA7
A
215 220Right-handed alpha
Helix 8
AA8
A
222 232Right-handed alpha
Helix 9
AA9
A
250 263Right-handed alpha
Helix 10
AB1
A
279 291Right-handed alpha
Helix 11
AB2
A
312 322Right-handed alpha
Helix 12
AB3
A
329 339Right-handed alpha
Helix 13
AB4
B
22 35Right-handed alpha
Helix 14
AB5
B
46 60Right-handed alpha
Helix 15
AB6
B
100 121Right-handed alpha
Helix 16
AB7
B
133 137Right-handed 310
Helix 17
AB8
B
155 165Right-handed alpha
Helix 18
AB9
B
171 196Right-handed alpha
Helix 19
AC1
B
222 232Right-handed alpha
Helix 20
AC2
B
238 242Right-handed 310
Helix 21
AC3
B
250 263Right-handed alpha
Helix 22
AC4
B
279 291Right-handed alpha
Helix 23
AC5
B
312 322Right-handed alpha
Helix 24
AC6
B
329 339Right-handed alpha
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There are 6 sheets in PDB entry 8JQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
38 43parallel
Strand 3
A
14 17parallel
Strand 4
A
85 91parallel
Strand 5
A
127 131parallel
Strand 6
A
200 206parallel
Strand 7
A
270 273parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
309 310parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
245 249parallel
Strand 3
A
276 278anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
38 43parallel
Strand 3
B
14 17parallel
Strand 4
B
87 91parallel
Strand 5
B
127 131parallel
Strand 6
B
200 206parallel
Strand 7
B
270 273parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
309 310parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
245 249parallel
Strand 3
B
276 278anti-parallel
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