Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JQN entry

There are 6 chains in PDB entry 8JQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 VAL 2SER 118
L
 LEU 4LEU 108
h
 VAL 2SER 117
l
 LEU 4LEU 108
a
 HIS 1ALA 352
A
 HIS -1ALA 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 8JQN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
62 65Right-handed 310
Helix 3
AA3
H
87 91Right-handed 310
Helix 4
AA4
L
26 30Right-handed 310
Helix 5
AA5
L
78 82Right-handed 310
Helix 6
AA6
h
28 32Right-handed 310
Helix 7
AA7
h
62 65Right-handed 310
Helix 8
AA8
h
87 91Right-handed 310
Helix 9
AA9
h
101 105Right-handed 310
Helix 10
AB1
l
78 82Right-handed 310
Helix 11
AB2
a
38 52Right-handed alpha
Helix 12
AB3
a
61 82Right-handed alpha
Helix 13
AB4
a
144 146Right-handed 310
Helix 14
AB5
a
157 160Right-handed 310
Helix 15
AB6
a
180 183Right-handed 310
Helix 16
AB7
a
226 230Right-handed 310
Helix 17
AB8
a
244 248Right-handed 310
Helix 18
AB9
a
252 256Right-handed 310
Helix 19
AC1
a
341 345Right-handed 310
Helix 20
AC2
A
38 52Right-handed alpha
Helix 21
AC3
A
61 82Right-handed alpha
Helix 22
AC4
A
144 146Right-handed 310
Helix 23
AC5
A
180 183Right-handed 310
Helix 24
AC6
A
226 230Right-handed 310
Helix 25
AC7
A
237 241Right-handed 310
Helix 26
AC8
A
244 248Right-handed 310
Helix 27
AC9
A
252 256Right-handed 310
Helix 28
AD1
A
341 345Right-handed 310
Back to top of page

There are 18 sheets in PDB entry 8JQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
69 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 97anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
103 107parallel
Strand 3
L
83 90anti-parallel
Strand 4
L
33 37anti-parallel
Strand 5
L
44 47anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
103 107parallel
Strand 3
L
83 90anti-parallel
Strand 4
L
97 99anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
17 23first strand
Strand 2
L
69 75anti-parallel
Strand 3
L
61 66anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
3 7first strand
Strand 2
h
17 25anti-parallel
Strand 3
h
78 84anti-parallel
Strand 4
h
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
11 12first strand
Strand 2
h
112 116parallel
Strand 3
h
92 97anti-parallel
Strand 4
h
34 39anti-parallel
Strand 5
h
45 51anti-parallel
Strand 6
h
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
9 12first strand
Strand 2
l
103 107parallel
Strand 3
l
84 90anti-parallel
Strand 4
l
33 37anti-parallel
Strand 5
l
44 47anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
9 12first strand
Strand 2
l
103 107parallel
Strand 3
l
84 90anti-parallel
Strand 4
l
97 99anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
18 23first strand
Strand 2
l
69 74anti-parallel
Strand 3
l
61 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
2 7first strand
Strand 2
a
12 22anti-parallel
Strand 3
A
12 22anti-parallel
Strand 4
A
1 7anti-parallel
Strand 5
a
2 7anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
87 90first strand
Strand 2
a
132 135parallel
Strand 3
a
56 57parallel
Strand 4
a
148 149parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
153 155first strand
Strand 2
a
169 171anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
329 331first strand
Strand 2
a
321 324anti-parallel
Strand 3
a
273 277anti-parallel
Strand 4
a
210 217anti-parallel
Strand 5
a
200 206anti-parallel
Strand 6
a
192 196anti-parallel
Strand 7
a
185 189anti-parallel
Strand 8
A
185 189anti-parallel
Strand 9
A
192 196anti-parallel
Strand 10
A
200 206anti-parallel
Strand 11
A
210 217anti-parallel
Strand 12
A
273 277anti-parallel
Strand 13
A
321 324anti-parallel
Strand 14
A
329 331anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
284 287first strand
Strand 2
a
310 313parallel
Strand 3
a
336 337anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
165 168parallel
Strand 3
A
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
132 135parallel
Strand 3
A
56 57parallel
Strand 4
A
148 149parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 287first strand
Strand 2
A
311 313parallel
Strand 3
A
335 337anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il