Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JQO entry

There are 4 chains in PDB entry 8JQO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 391
B	MET 1	GLU 391
C	MET 1	GLU 391
D	THR 3	GLU 391

There are 56 helices in PDB entry 8JQO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	24	Right-handed alpha
Helix 2	AA2	A	35	41	Right-handed alpha
Helix 3	AA3	A	50	59	Right-handed alpha
Helix 4	AA4	A	62	69	Right-handed alpha
Helix 5	AA5	A	88	92	Right-handed alpha
Helix 6	AA6	A	101	116	Right-handed alpha
Helix 7	AA7	A	165	169	Right-handed 310
Helix 8	AA8	A	230	234	Right-handed 310
Helix 9	AA9	A	235	248	Right-handed alpha
Helix 10	AB1	A	285	287	Right-handed 310
Helix 11	AB2	A	297	320	Right-handed alpha
Helix 12	AB3	A	322	327	Right-handed alpha
Helix 13	AB4	A	327	351	Right-handed alpha
Helix 14	AB5	A	357	374	Right-handed alpha
Helix 15	AB6	A	374	387	Right-handed alpha
Helix 16	AB7	B	11	24	Right-handed alpha
Helix 17	AB8	B	35	41	Right-handed alpha
Helix 18	AB9	B	50	59	Right-handed alpha
Helix 19	AC1	B	62	69	Right-handed alpha
Helix 20	AC2	B	88	92	Right-handed alpha
Helix 21	AC3	B	101	116	Right-handed alpha
Helix 22	AC4	B	165	169	Right-handed 310
Helix 23	AC5	B	230	234	Right-handed 310
Helix 24	AC6	B	235	248	Right-handed alpha
Helix 25	AC7	B	285	287	Right-handed 310
Helix 26	AC8	B	297	320	Right-handed alpha
Helix 27	AC9	B	322	327	Right-handed alpha
Helix 28	AD1	B	327	351	Right-handed alpha
Helix 29	AD2	B	357	374	Right-handed alpha
Helix 30	AD3	B	374	387	Right-handed alpha
Helix 31	AD4	C	11	24	Right-handed alpha
Helix 32	AD5	C	50	59	Right-handed alpha
Helix 33	AD6	C	62	69	Right-handed alpha
Helix 34	AD7	C	88	93	Right-handed alpha
Helix 35	AD8	C	101	115	Right-handed alpha
Helix 36	AD9	C	165	169	Right-handed 310
Helix 37	AE1	C	230	234	Right-handed 310
Helix 38	AE2	C	235	248	Right-handed alpha
Helix 39	AE3	C	285	287	Right-handed 310
Helix 40	AE4	C	297	320	Right-handed alpha
Helix 41	AE5	C	322	327	Right-handed alpha
Helix 42	AE6	C	327	351	Right-handed alpha
Helix 43	AE7	C	357	374	Right-handed alpha
Helix 44	AE8	C	374	387	Right-handed alpha
Helix 45	AE9	D	11	19	Right-handed alpha
Helix 46	AF1	D	50	58	Right-handed alpha
Helix 47	AF2	D	88	92	Right-handed alpha
Helix 48	AF3	D	165	169	Right-handed 310
Helix 49	AF4	D	230	234	Right-handed 310
Helix 50	AF5	D	235	248	Right-handed alpha
Helix 51	AF6	D	285	287	Right-handed 310
Helix 52	AF7	D	297	320	Right-handed alpha
Helix 53	AF8	D	322	327	Right-handed alpha
Helix 54	AF9	D	327	351	Right-handed alpha
Helix 55	AG1	D	357	374	Right-handed alpha
Helix 56	AG2	D	374	387	Right-handed alpha

There are 16 sheets in PDB entry 8JQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	28	31	parallel
Strand 3	A	2	8	parallel
Strand 4	A	146	157	parallel
Strand 5	A	137	143	anti-parallel
Strand 6	A	126	130	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	28	31	parallel
Strand 3	A	2	8	parallel
Strand 4	A	146	157	parallel
Strand 5	A	281	283	parallel
Strand 6	A	277	278	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	97	99	anti-parallel
Strand 3	A	70	72	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	87	first strand
Strand 2	A	74	79	anti-parallel
Strand 3	A	199	202	parallel
Strand 4	A	209	215	anti-parallel
Strand 5	A	218	225	anti-parallel
Strand 6	A	175	190	anti-parallel
Strand 7	A	260	274	anti-parallel
Strand 8	A	289	290	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	28	31	parallel
Strand 3	B	2	8	parallel
Strand 4	B	146	157	parallel
Strand 5	B	137	143	anti-parallel
Strand 6	B	126	130	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	28	31	parallel
Strand 3	B	2	8	parallel
Strand 4	B	146	157	parallel
Strand 5	B	281	283	parallel
Strand 6	B	277	278	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	97	99	anti-parallel
Strand 3	B	70	72	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	87	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	199	202	parallel
Strand 4	B	209	215	anti-parallel
Strand 5	B	218	225	anti-parallel
Strand 6	B	184	190	anti-parallel
Strand 7	B	260	266	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	180	first strand
Strand 2	B	269	274	anti-parallel
Strand 3	B	289	290	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	28	31	parallel
Strand 3	C	5	8	parallel
Strand 4	C	154	157	parallel
Strand 5	C	281	283	parallel
Strand 6	C	277	278	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	49	first strand
Strand 2	C	97	99	anti-parallel
Strand 3	C	70	72	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	87	first strand
Strand 2	C	74	79	anti-parallel
Strand 3	C	199	204	parallel
Strand 4	C	207	215	anti-parallel
Strand 5	C	218	225	anti-parallel
Strand 6	C	175	190	anti-parallel
Strand 7	C	260	274	anti-parallel
Strand 8	C	289	290	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	148	152	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	154	157	parallel
Strand 3	D	281	283	parallel
Strand 4	D	277	278	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	97	98	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	87	first strand
Strand 2	D	74	79	anti-parallel
Strand 3	D	199	204	parallel
Strand 4	D	207	215	anti-parallel
Strand 5	D	218	225	anti-parallel
Strand 6	D	175	190	anti-parallel
Strand 7	D	260	274	anti-parallel
Strand 8	D	289	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JQO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQO