Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JQS entry

There are 6 chains in PDB entry 8JQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 HIS 1ALA 358
h
 VAL 2SER 118
l
 LEU 4VAL 107
H
 VAL 2SER 118
L
 LEU 4LEU 110
A
 HIS 1ALA 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8JQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
42 56Right-handed alpha
Helix 2
AA2
a
65 82Right-handed alpha
Helix 3
AA3
a
148 150Right-handed 310
Helix 4
AA4
a
184 187Right-handed 310
Helix 5
AA5
a
230 234Right-handed 310
Helix 6
AA6
a
248 252Right-handed 310
Helix 7
AA7
a
256 260Right-handed 310
Helix 8
AA8
a
345 349Right-handed 310
Helix 9
AA9
h
28 32Right-handed 310
Helix 10
AB1
h
87 91Right-handed 310
Helix 11
AB2
l
26 30Right-handed 310
Helix 12
AB3
H
28 32Right-handed 310
Helix 13
AB4
H
87 91Right-handed 310
Helix 14
AB5
L
26 30Right-handed 310
Helix 15
AB6
A
42 56Right-handed alpha
Helix 16
AB7
A
65 84Right-handed alpha
Helix 17
AB8
A
148 150Right-handed 310
Helix 18
AB9
A
184 187Right-handed 310
Helix 19
AC1
A
230 234Right-handed 310
Helix 20
AC2
A
248 252Right-handed 310
Helix 21
AC3
A
256 260Right-handed 310
Helix 22
AC4
A
345 349Right-handed 310
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There are 20 sheets in PDB entry 8JQS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
2 11first strand
Strand 2
a
16 26anti-parallel
Strand 3
A
17 26anti-parallel
Strand 4
A
2 10anti-parallel
Strand 5
a
2 11anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
37 39first strand
Strand 2
a
170 175parallel
Strand 3
a
157 159anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
60 61first strand
Strand 2
a
152 153parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
91 94first strand
Strand 2
a
136 139parallel
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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
333 335first strand
Strand 2
a
326 328anti-parallel
Strand 3
a
277 280anti-parallel
Strand 4
a
214 221anti-parallel
Strand 5
a
204 210anti-parallel
Strand 6
a
196 200anti-parallel
Strand 7
a
189 193anti-parallel
Strand 8
A
189 193anti-parallel
Strand 9
A
196 200anti-parallel
Strand 10
A
204 210anti-parallel
Strand 11
A
214 221anti-parallel
Strand 12
A
277 281anti-parallel
Strand 13
A
325 328anti-parallel
Strand 14
A
333 335anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
288 291first strand
Strand 2
a
314 317parallel
Strand 3
a
340 341anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
3 6first strand
Strand 2
h
18 25anti-parallel
Strand 3
h
78 83anti-parallel
Strand 4
h
69 73anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
10 12first strand
Strand 2
h
112 116parallel
Strand 3
h
92 99anti-parallel
Strand 4
h
33 39anti-parallel
Strand 5
h
45 52anti-parallel
Strand 6
h
57 59anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
10 12first strand
Strand 2
h
112 116parallel
Strand 3
h
92 99anti-parallel
Strand 4
h
105 108anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
18 23first strand
Strand 2
l
69 74anti-parallel
Strand 3
l
61 65anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
44 47first strand
Strand 2
l
33 37anti-parallel
Strand 3
l
84 90anti-parallel
Strand 4
l
99 101anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
105 108anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
105 109parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 37anti-parallel
Strand 5
L
44 47anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
105 109parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
99 101anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
69 74anti-parallel
Strand 3
L
61 66anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
171 175parallel
Strand 3
A
157 161anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
137 139parallel
Strand 3
A
60 61parallel
Strand 4
A
152 153parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
314 317parallel
Strand 3
A
340 341anti-parallel
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