Analysis of interatomic Contacts of Structural Units in PDB entry:
8JQZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JQZ entry

There are 2 chains in PDB entry 8JQZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 15HIS 411
B
 LYS 15HIS 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8JQZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 25Right-handed 310
Helix 2
AA2
A
34 48Right-handed alpha
Helix 3
AA3
A
49 66Right-handed alpha
Helix 4
AA4
A
80 90Right-handed alpha
Helix 5
AA5
A
135 143Right-handed alpha
Helix 6
AA6
A
144 148Right-handed 310
Helix 7
AA7
A
164 173Right-handed alpha
Helix 8
AA8
A
183 195Right-handed alpha
Helix 9
AA9
A
200 217Right-handed alpha
Helix 10
AB1
A
238 250Right-handed alpha
Helix 11
AB2
A
251 262Right-handed alpha
Helix 12
AB3
A
266 289Right-handed alpha
Helix 13
AB4
A
300 318Right-handed alpha
Helix 14
AB5
A
321 332Right-handed alpha
Helix 15
AB6
A
335 342Right-handed alpha
Helix 16
AB7
A
356 373Right-handed alpha
Helix 17
AB8
A
383 411Right-handed alpha
Helix 18
AB9
B
18 26Right-handed 310
Helix 19
AC1
B
34 48Right-handed alpha
Helix 20
AC2
B
49 66Right-handed alpha
Helix 21
AC3
B
80 90Right-handed alpha
Helix 22
AC4
B
135 143Right-handed alpha
Helix 23
AC5
B
144 148Right-handed 310
Helix 24
AC6
B
164 173Right-handed alpha
Helix 25
AC7
B
183 195Right-handed alpha
Helix 26
AC8
B
200 214Right-handed alpha
Helix 27
AC9
B
238 250Right-handed alpha
Helix 28
AD1
B
251 253Right-handed 310
Helix 29
AD2
B
254 262Right-handed alpha
Helix 30
AD3
B
266 289Right-handed alpha
Helix 31
AD4
B
300 318Right-handed alpha
Helix 32
AD5
B
321 332Right-handed alpha
Helix 33
AD6
B
335 341Right-handed alpha
Helix 34
AD7
B
342 343Right-handed 310
Helix 35
AD8
B
344 348Right-handed 310
Helix 36
AD9
B
356 373Right-handed alpha
Helix 37
AE1
B
383 411Right-handed alpha
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There are 2 sheets in PDB entry 8JQZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
121 127anti-parallel
Strand 3
A
69 75parallel
Strand 4
A
150 154parallel
Strand 5
A
176 181parallel
Strand 6
A
227 228parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
121 125anti-parallel
Strand 3
B
69 74parallel
Strand 4
B
150 155parallel
Strand 5
B
177 181parallel
Strand 6
B
227 228parallel
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