Analysis of interatomic Contacts of Structural Units in PDB entry:
8JR3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JR3 entry

There are 6 chains in PDB entry 8JR3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
ILE 188GLU 603
F
ILE 188GLU 603
A
GLN 1GLU 215
D
ASP 1LYS 212
B
GLN 1LYS 217
C
ASP 1LYS 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8JR3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
E
204 207Right-handed 310
Helix 2
AA2
E
378 382Right-handed 310
Helix 3
AA3
E
393 398Right-handed alpha
Helix 4
AA4
F
204 207Right-handed 310
Helix 5
AA5
F
378 382Right-handed 310
Helix 6
AA6
F
393 398Right-handed alpha
Helix 7
AA7
A
61 64Right-handed 310
Helix 8
AA8
A
86 90Right-handed 310
Helix 9
AA9
D
84 88Right-handed 310
Helix 10
AB1
D
126 133Right-handed alpha
Helix 11
AB2
D
188 194Right-handed alpha
Helix 12
AB3
B
61 64Right-handed 310
Helix 13
AB4
B
86 90Right-handed 310
Helix 14
AB5
C
84 88Right-handed 310
Helix 15
AB6
C
126 132Right-handed alpha
Helix 16
AB7
C
188 194Right-handed alpha
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There are 36 sheets in PDB entry 8JR3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
200 202first strand
Strand 2
E
587 596anti-parallel
Strand 3
E
571 582anti-parallel
Strand 4
E
558 568anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
216 225first strand
Strand 2
E
228 238anti-parallel
Strand 3
E
243 257anti-parallel
Strand 4
E
263 271anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
279 287first strand
Strand 2
E
290 297anti-parallel
Strand 3
E
314 320anti-parallel
Strand 4
E
332 337anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
339 341first strand
Strand 2
E
425 430parallel
Strand 3
E
407 417anti-parallel
Strand 4
E
361 371anti-parallel
Strand 5
E
347 350anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
339 341first strand
Strand 2
E
425 430parallel
Strand 3
E
407 417anti-parallel
Strand 4
E
361 371anti-parallel
Strand 5
E
356 358anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
442 447first strand
Strand 2
E
450 455anti-parallel
Strand 3
E
465 471anti-parallel
Strand 4
E
476 477anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
511 515first strand
Strand 2
E
520 526anti-parallel
Strand 3
E
535 541anti-parallel
Strand 4
E
544 550anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
201 202first strand
Strand 2
F
587 596anti-parallel
Strand 3
F
571 582anti-parallel
Strand 4
F
558 568anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
216 225first strand
Strand 2
F
228 237anti-parallel
Strand 3
F
244 257anti-parallel
Strand 4
F
263 271anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
279 287first strand
Strand 2
F
290 297anti-parallel
Strand 3
F
314 320anti-parallel
Strand 4
F
332 337anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
339 341first strand
Strand 2
F
425 430parallel
Strand 3
F
407 417anti-parallel
Strand 4
F
361 371anti-parallel
Strand 5
F
347 350anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
339 341first strand
Strand 2
F
425 430parallel
Strand 3
F
407 417anti-parallel
Strand 4
F
361 371anti-parallel
Strand 5
F
356 358anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
442 447first strand
Strand 2
F
450 455anti-parallel
Strand 3
F
465 471anti-parallel
Strand 4
F
476 479anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
511 515first strand
Strand 2
F
520 526anti-parallel
Strand 3
F
535 540anti-parallel
Strand 4
F
545 550anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
67 72anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 12first strand
Strand 2
A
110 114parallel
Strand 3
A
91 99anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
57 59anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 12first strand
Strand 2
A
110 114parallel
Strand 3
A
91 99anti-parallel
Strand 4
A
102 106anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
123 127first strand
Strand 2
A
138 148anti-parallel
Strand 3
A
179 188anti-parallel
Strand 4
A
166 168anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
123 127first strand
Strand 2
A
138 148anti-parallel
Strand 3
A
179 188anti-parallel
Strand 4
A
172 173anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
154 157first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
208 213anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4 6first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
75 80anti-parallel
Strand 4
D
67 72anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 14first strand
Strand 2
D
108 112parallel
Strand 3
D
89 95anti-parallel
Strand 4
D
38 43anti-parallel
Strand 5
D
50 54anti-parallel
Strand 6
D
58 59anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 14first strand
Strand 2
D
108 112parallel
Strand 3
D
89 95anti-parallel
Strand 4
D
102 103anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
119 123first strand
Strand 2
D
134 144anti-parallel
Strand 3
D
178 187anti-parallel
Strand 4
D
165 168anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
158 159first strand
Strand 2
D
150 155anti-parallel
Strand 3
D
197 202anti-parallel
Strand 4
D
210 211anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 7first strand
Strand 2
B
16 25anti-parallel
Strand 3
B
77 85anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
11 12first strand
Strand 2
B
110 114parallel
Strand 3
B
91 98anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
11 12first strand
Strand 2
B
110 114parallel
Strand 3
B
91 98anti-parallel
Strand 4
B
103 106anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
123 127first strand
Strand 2
B
138 148anti-parallel
Strand 3
B
179 188anti-parallel
Strand 4
B
166 168anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
123 127first strand
Strand 2
B
138 148anti-parallel
Strand 3
B
179 188anti-parallel
Strand 4
B
172 173anti-parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
154 157first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
208 213anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
75 81anti-parallel
Strand 4
C
67 72anti-parallel
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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 14first strand
Strand 2
C
107 112parallel
Strand 3
C
90 95anti-parallel
Strand 4
C
38 43anti-parallel
Strand 5
C
50 54anti-parallel
Strand 6
C
58 59anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 14first strand
Strand 2
C
107 112parallel
Strand 3
C
90 95anti-parallel
Strand 4
C
102 103anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
119 123first strand
Strand 2
C
134 144anti-parallel
Strand 3
C
178 187anti-parallel
Strand 4
C
164 168anti-parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
150 155first strand
Strand 2
C
197 202anti-parallel
Strand 3
C
210 211anti-parallel
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