Analysis of interatomic Contacts of Structural Units in PDB entry:
8JR8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JR8 entry

There are 8 chains in PDB entry 8JR8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	U 1	U 17
F	A 3	C 22
G	U 1	U 18
H	A 3	C 22
A	MET 1	TYR 506
C	MET 1	TYR 506
D	LYS 167	ILE 418
B	LYS 167	ILE 418

There are 42 helices in PDB entry 8JR8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	30	Right-handed alpha
Helix 2	AA2	A	47	60	Right-handed alpha
Helix 3	AA3	A	77	83	Right-handed alpha
Helix 4	AA4	A	98	106	Right-handed alpha
Helix 5	AA5	A	109	131	Right-handed alpha
Helix 6	AA6	A	144	151	Right-handed alpha
Helix 7	AA7	A	205	215	Right-handed alpha
Helix 8	AA8	A	226	230	Right-handed alpha
Helix 9	AA9	A	248	264	Right-handed alpha
Helix 10	AB1	A	331	351	Right-handed alpha
Helix 11	AB2	A	366	376	Right-handed alpha
Helix 12	AB3	A	451	465	Right-handed alpha
Helix 13	AB4	A	477	492	Right-handed alpha
Helix 14	AB5	C	15	17	Right-handed 310
Helix 15	AB6	C	23	30	Right-handed alpha
Helix 16	AB7	C	46	61	Right-handed alpha
Helix 17	AB8	C	77	83	Right-handed alpha
Helix 18	AB9	C	97	104	Right-handed alpha
Helix 19	AC1	C	109	131	Right-handed alpha
Helix 20	AC2	C	144	151	Right-handed alpha
Helix 21	AC3	C	205	215	Right-handed alpha
Helix 22	AC4	C	248	264	Right-handed alpha
Helix 23	AC5	C	331	351	Right-handed alpha
Helix 24	AC6	C	366	375	Right-handed alpha
Helix 25	AC7	C	451	464	Right-handed alpha
Helix 26	AC8	C	477	491	Right-handed alpha
Helix 27	AC9	C	502	506	Right-handed 310
Helix 28	AD1	D	219	224	Right-handed 310
Helix 29	AD2	D	227	233	Right-handed 310
Helix 30	AD3	D	234	236	Right-handed 310
Helix 31	AD4	D	243	248	Right-handed alpha
Helix 32	AD5	D	257	280	Right-handed alpha
Helix 33	AD6	D	353	366	Right-handed alpha
Helix 34	AD7	D	369	385	Right-handed alpha
Helix 35	AD8	B	219	226	Right-handed 310
Helix 36	AD9	B	227	233	Right-handed 310
Helix 37	AE1	B	234	236	Right-handed 310
Helix 38	AE2	B	244	246	Right-handed 310
Helix 39	AE3	B	257	280	Right-handed alpha
Helix 40	AE4	B	300	302	Right-handed 310
Helix 41	AE5	B	353	366	Right-handed alpha
Helix 42	AE6	B	369	385	Right-handed alpha

There are 17 sheets in PDB entry 8JR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	B	409	412	parallel
Strand 3	B	169	172	anti-parallel
Strand 4	A	397	398	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	409	412	anti-parallel
Strand 3	A	417	420	anti-parallel
Strand 4	A	441	448	anti-parallel
Strand 5	A	383	389	anti-parallel
Strand 6	A	356	361	parallel
Strand 7	A	278	281	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	41	46	parallel
Strand 3	A	138	143	parallel
Strand 4	A	221	225	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	431	432	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	D	410	412	parallel
Strand 3	D	169	173	anti-parallel
Strand 4	C	396	398	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	409	412	anti-parallel
Strand 3	C	417	420	anti-parallel
Strand 4	C	441	447	anti-parallel
Strand 5	C	382	389	anti-parallel
Strand 6	C	356	361	parallel
Strand 7	C	278	287	parallel
Strand 8	C	297	301	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	12	13	anti-parallel
Strand 3	C	270	271	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	95	first strand
Strand 2	C	42	45	parallel
Strand 3	C	139	143	parallel
Strand 4	C	223	225	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	334	336	anti-parallel
Strand 3	D	326	328	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	213	216	anti-parallel
Strand 3	D	184	188	anti-parallel
Strand 4	D	238	242	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	286	first strand
Strand 2	D	291	294	anti-parallel
Strand 3	D	317	323	anti-parallel
Strand 4	D	311	314	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	286	first strand
Strand 2	D	291	294	anti-parallel
Strand 3	D	317	323	anti-parallel
Strand 4	D	339	344	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	393	first strand
Strand 2	D	401	403	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	291	294	anti-parallel
Strand 3	B	317	328	anti-parallel
Strand 4	B	311	314	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	291	294	anti-parallel
Strand 3	B	317	328	anti-parallel
Strand 4	B	334	344	anti-parallel
Strand 5	B	175	180	anti-parallel
Strand 6	B	402	404	anti-parallel
Strand 7	B	390	391	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	213	216	anti-parallel
Strand 3	B	184	188	anti-parallel
Strand 4	B	238	242	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	308	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JR8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JR8