Analysis of interatomic Contacts of Structural Units in PDB entry:
8JRB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JRB entry

There are 2 chains in PDB entry 8JRB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 574
B
 MET 1ASP 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8JRB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
58 67Right-handed alpha
Helix 3
AA3
A
74 84Right-handed alpha
Helix 4
AA4
A
95 103Right-handed alpha
Helix 5
AA5
A
108 117Right-handed alpha
Helix 6
AA6
A
136 162Right-handed alpha
Helix 7
AA7
A
169 174Right-handed 310
Helix 8
AA8
A
175 182Right-handed alpha
Helix 9
AA9
A
185 205Right-handed alpha
Helix 10
AB1
A
209 236Right-handed alpha
Helix 11
AB2
A
241 252Right-handed alpha
Helix 12
AB3
A
268 273Right-handed alpha
Helix 13
AB4
A
274 276Right-handed 310
Helix 14
AB5
A
278 303Right-handed alpha
Helix 15
AB6
A
334 341Right-handed 310
Helix 16
AB7
A
356 367Right-handed alpha
Helix 17
AB8
A
368 377Right-handed alpha
Helix 18
AB9
A
380 391Right-handed alpha
Helix 19
AC1
A
393 397Right-handed 310
Helix 20
AC2
A
398 413Right-handed alpha
Helix 21
AC3
A
417 430Right-handed alpha
Helix 22
AC4
A
434 449Right-handed alpha
Helix 23
AC5
A
449 467Right-handed alpha
Helix 24
AC6
A
483 514Right-handed alpha
Helix 25
AC7
A
536 556Right-handed alpha
Helix 26
AC8
B
8 19Right-handed alpha
Helix 27
AC9
B
53 55Right-handed 310
Helix 28
AD1
B
58 67Right-handed alpha
Helix 29
AD2
B
74 84Right-handed alpha
Helix 30
AD3
B
95 102Right-handed alpha
Helix 31
AD4
B
108 117Right-handed alpha
Helix 32
AD5
B
136 162Right-handed alpha
Helix 33
AD6
B
169 173Right-handed 310
Helix 34
AD7
B
174 182Right-handed alpha
Helix 35
AD8
B
185 205Right-handed alpha
Helix 36
AD9
B
209 236Right-handed alpha
Helix 37
AE1
B
241 251Right-handed alpha
Helix 38
AE2
B
268 273Right-handed alpha
Helix 39
AE3
B
274 276Right-handed 310
Helix 40
AE4
B
278 303Right-handed alpha
Helix 41
AE5
B
334 341Right-handed 310
Helix 42
AE6
B
356 367Right-handed alpha
Helix 43
AE7
B
368 377Right-handed alpha
Helix 44
AE8
B
380 391Right-handed alpha
Helix 45
AE9
B
393 397Right-handed 310
Helix 46
AF1
B
398 413Right-handed alpha
Helix 47
AF2
B
417 430Right-handed alpha
Helix 48
AF3
B
434 449Right-handed alpha
Helix 49
AF4
B
449 467Right-handed alpha
Helix 50
AF5
B
483 514Right-handed alpha
Helix 51
AF6
B
536 556Right-handed alpha
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There are 11 sheets in PDB entry 8JRB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
47 51parallel
Strand 3
A
35 42anti-parallel
Strand 4
A
25 32anti-parallel
Strand 5
A
69 72parallel
Strand 6
A
91 94parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
308 309anti-parallel
Strand 3
A
304 305anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
324 326anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 524first strand
Strand 2
A
527 533anti-parallel
Strand 3
A
347 354anti-parallel
Strand 4
A
563 568anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 472first strand
Strand 2
A
478 481anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
47 51parallel
Strand 3
B
35 42anti-parallel
Strand 4
B
25 32anti-parallel
Strand 5
B
69 72parallel
Strand 6
B
91 94parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
308 309anti-parallel
Strand 3
B
304 305anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
264 265anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 314first strand
Strand 2
B
324 326anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
519 524first strand
Strand 2
B
527 533anti-parallel
Strand 3
B
347 354anti-parallel
Strand 4
B
563 568anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 472first strand
Strand 2
B
478 481anti-parallel
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