Analysis of interatomic Contacts of Structural Units in PDB entry:
8JRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JRD entry

There are 6 chains in PDB entry 8JRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ASP 136
A
 PRO 138GLY 163
A
 PHE 165LEU 388
B
 HIS 0ASP 136
B
 PRO 138GLY 163
B
 PHE 165LEU 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8JRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
35 44Right-handed alpha
Helix 3
AA3
A
49 63Right-handed alpha
Helix 4
AA4
A
73 80Right-handed alpha
Helix 5
AA5
A
80 85Right-handed alpha
Helix 6
AA6
A
90 118Right-handed alpha
Helix 7
AA7
A
120 124Right-handed 310
Helix 8
AA8
A
139 149Right-handed alpha
Helix 9
AA9
A
165 180Right-handed alpha
Helix 10
AB1
A
193 197Right-handed 310
Helix 11
AB2
A
205 215Right-handed alpha
Helix 12
AB3
A
269 287Right-handed alpha
Helix 13
AB4
A
288 290Right-handed 310
Helix 14
AB5
A
305 317Right-handed alpha
Helix 15
AB6
A
319 322Right-handed 310
Helix 16
AB7
A
323 334Right-handed alpha
Helix 17
AB8
A
336 338Right-handed 310
Helix 18
AB9
A
339 355Right-handed alpha
Helix 19
AC1
B
3 12Right-handed alpha
Helix 20
AC2
B
35 44Right-handed alpha
Helix 21
AC3
B
49 63Right-handed alpha
Helix 22
AC4
B
73 79Right-handed alpha
Helix 23
AC5
B
80 85Right-handed alpha
Helix 24
AC6
B
90 118Right-handed alpha
Helix 25
AC7
B
120 124Right-handed 310
Helix 26
AC8
B
139 149Right-handed alpha
Helix 27
AC9
B
165 180Right-handed alpha
Helix 28
AD1
B
193 197Right-handed 310
Helix 29
AD2
B
205 215Right-handed alpha
Helix 30
AD3
B
269 287Right-handed alpha
Helix 31
AD4
B
288 290Right-handed 310
Helix 32
AD5
B
305 317Right-handed alpha
Helix 33
AD6
B
323 334Right-handed alpha
Helix 34
AD7
B
336 338Right-handed 310
Helix 35
AD8
B
339 355Right-handed alpha
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There are 6 sheets in PDB entry 8JRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
126 131parallel
Strand 3
A
185 192parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
18 25anti-parallel
Strand 6
A
236 245anti-parallel
Strand 7
A
377 385anti-parallel
Strand 8
A
366 373anti-parallel
Strand 9
A
298 301parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
67 69anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
B
253 258anti-parallel
Strand 3
B
261 266anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 258first strand
Strand 2
A
261 266anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 160first strand
Strand 2
B
126 131parallel
Strand 3
B
185 192parallel
Strand 4
B
218 225anti-parallel
Strand 5
B
18 25anti-parallel
Strand 6
B
236 245anti-parallel
Strand 7
B
377 385anti-parallel
Strand 8
B
366 373anti-parallel
Strand 9
B
298 301parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
67 69anti-parallel
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