Analysis of interatomic Contacts of Structural Units in PDB entry:
8JRK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JRK entry

There are 6 chains in PDB entry 8JRK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	GLU 179
B	PRO 37	TRP 221
E	ASN 3	ALA 14
C	GLU 3	PHE 180
D	PRO 37	ALA 223
F	ASN 3	SER 15

There are 14 helices in PDB entry 8JRK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	51	Right-handed 310
Helix 2	AA2	A	55	77	Right-handed alpha
Helix 3	AA3	B	84	86	Right-handed 310
Helix 4	AA4	B	87	97	Right-handed alpha
Helix 5	AA5	B	99	106	Right-handed alpha
Helix 6	AA6	B	106	111	Right-handed alpha
Helix 7	AA7	B	111	121	Right-handed alpha
Helix 8	AA8	C	45	51	Right-handed 310
Helix 9	AA9	C	56	77	Right-handed alpha
Helix 10	AB1	D	84	86	Right-handed 310
Helix 11	AB2	D	87	96	Right-handed alpha
Helix 12	AB3	D	97	106	Right-handed alpha
Helix 13	AB4	D	106	111	Right-handed alpha
Helix 14	AB5	D	111	120	Right-handed alpha

There are 14 sheets in PDB entry 8JRK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	29	35	anti-parallel
Strand 3	A	19	26	anti-parallel
Strand 4	A	5	15	anti-parallel
Strand 5	B	40	51	anti-parallel
Strand 6	B	56	65	anti-parallel
Strand 7	B	68	74	anti-parallel
Strand 8	B	80	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	133	134	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	138	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	161	166	anti-parallel
Strand 4	A	174	178	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	135	first strand
Strand 2	B	148	155	anti-parallel
Strand 3	B	188	194	anti-parallel
Strand 4	B	175	177	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	135	first strand
Strand 2	B	148	155	anti-parallel
Strand 3	B	188	194	anti-parallel
Strand 4	B	181	182	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	204	209	anti-parallel
Strand 4	B	217	221	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	29	35	anti-parallel
Strand 3	C	19	26	anti-parallel
Strand 4	C	5	15	anti-parallel
Strand 5	D	40	51	anti-parallel
Strand 6	D	56	65	anti-parallel
Strand 7	D	68	74	anti-parallel
Strand 8	D	80	82	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	145	153	anti-parallel
Strand 4	C	133	134	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	145	153	anti-parallel
Strand 4	C	138	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	118	123	anti-parallel
Strand 3	C	161	166	anti-parallel
Strand 4	C	174	178	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	135	first strand
Strand 2	D	148	155	anti-parallel
Strand 3	D	188	194	anti-parallel
Strand 4	D	175	177	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	135	first strand
Strand 2	D	148	155	anti-parallel
Strand 3	D	188	194	anti-parallel
Strand 4	D	181	182	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	161	166	anti-parallel
Strand 3	D	203	210	anti-parallel
Strand 4	D	213	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JRK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JRK