Analysis of interatomic Contacts of Structural Units in PDB entry:
8JRP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JRP entry

There are 4 chains in PDB entry 8JRP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 9SER 149
A
 ILE 120ALA 869
D
 PHE 9SER 149
C
 ILE 120ALA 869
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 8JRP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 26Right-handed alpha
Helix 2
AA2
B
29 33Right-handed 310
Helix 3
AA3
B
45 56Right-handed alpha
Helix 4
AA4
B
70 85Right-handed alpha
Helix 5
AA5
B
91 100Right-handed alpha
Helix 6
AA6
B
118 129Right-handed alpha
Helix 7
AA7
B
144 148Right-handed 310
Helix 8
AA9
A
131 143Right-handed alpha
Helix 9
AB1
A
146 159Right-handed alpha
Helix 10
AB2
A
159 166Right-handed alpha
Helix 11
AB3
A
235 247Right-handed alpha
Helix 12
AB4
A
253 274Right-handed alpha
Helix 13
AB5
A
275 280Right-handed alpha
Helix 14
AB6
A
281 283Right-handed 310
Helix 15
AB7
A
284 292Right-handed alpha
Helix 16
AB8
A
293 303Right-handed 310
Helix 17
AB9
A
304 315Right-handed alpha
Helix 18
AC1
A
317 329Right-handed alpha
Helix 19
AC2
A
332 353Right-handed alpha
Helix 20
AC3
A
365 386Right-handed alpha
Helix 21
AC4
A
403 414Right-handed alpha
Helix 22
AC5
A
426 433Right-handed alpha
Helix 23
AC6
A
445 450Right-handed alpha
Helix 24
AC7
A
451 456Right-handed alpha
Helix 25
AC8
A
459 469Right-handed alpha
Helix 26
AC9
A
476 484Right-handed 310
Helix 27
AD1
A
485 515Right-handed alpha
Helix 28
AD2
A
531 547Right-handed alpha
Helix 29
AD3
A
548 553Right-handed 310
Helix 30
AD4
A
569 583Right-handed alpha
Helix 31
AD5
A
584 588Right-handed 310
Helix 32
AD6
A
609 626Right-handed alpha
Helix 33
AD7
A
634 643Right-handed alpha
Helix 34
AD8
A
647 649Right-handed 310
Helix 35
AD9
A
650 655Right-handed alpha
Helix 36
AE1
A
655 667Right-handed alpha
Helix 37
AE2
A
710 724Right-handed alpha
Helix 38
AE3
A
726 741Right-handed alpha
Helix 39
AE4
A
745 750Right-handed alpha
Helix 40
AE5
A
751 760Right-handed alpha
Helix 41
AE6
A
766 774Right-handed alpha
Helix 42
AE7
A
784 796Right-handed alpha
Helix 43
AE8
A
798 811Right-handed alpha
Helix 44
AE9
A
819 823Right-handed 310
Helix 45
AF1
A
842 844Right-handed 310
Helix 46
AF2
A
854 867Right-handed alpha
Helix 47
AF3
D
18 26Right-handed alpha
Helix 48
AF4
D
29 33Right-handed 310
Helix 49
AF5
D
45 56Right-handed alpha
Helix 50
AF6
D
70 85Right-handed alpha
Helix 51
AF7
D
91 100Right-handed alpha
Helix 52
AF8
D
118 129Right-handed alpha
Helix 53
AF9
D
144 148Right-handed 310
Helix 54
AG2
C
131 143Right-handed alpha
Helix 55
AG3
C
146 159Right-handed alpha
Helix 56
AG4
C
159 166Right-handed alpha
Helix 57
AG5
C
235 247Right-handed alpha
Helix 58
AG6
C
253 274Right-handed alpha
Helix 59
AG7
C
275 280Right-handed alpha
Helix 60
AG8
C
281 283Right-handed 310
Helix 61
AG9
C
284 292Right-handed alpha
Helix 62
AH1
C
293 303Right-handed 310
Helix 63
AH2
C
304 315Right-handed alpha
Helix 64
AH3
C
317 329Right-handed alpha
Helix 65
AH4
C
332 353Right-handed alpha
Helix 66
AH5
C
365 386Right-handed alpha
Helix 67
AH6
C
403 414Right-handed alpha
Helix 68
AH7
C
426 433Right-handed alpha
Helix 69
AH8
C
445 450Right-handed alpha
Helix 70
AH9
C
451 456Right-handed alpha
Helix 71
AI1
C
459 469Right-handed alpha
Helix 72
AI2
C
476 484Right-handed 310
Helix 73
AI3
C
485 515Right-handed alpha
Helix 74
AI4
C
531 547Right-handed alpha
Helix 75
AI5
C
548 553Right-handed 310
Helix 76
AI6
C
569 583Right-handed alpha
Helix 77
AI7
C
584 588Right-handed 310
Helix 78
AI8
C
609 626Right-handed alpha
Helix 79
AI9
C
634 643Right-handed alpha
Helix 80
AJ1
C
647 649Right-handed 310
Helix 81
AJ2
C
650 655Right-handed alpha
Helix 82
AJ3
C
655 667Right-handed alpha
Helix 83
AJ4
C
710 724Right-handed alpha
Helix 84
AJ5
C
726 741Right-handed alpha
Helix 85
AJ6
C
745 750Right-handed alpha
Helix 86
AJ7
C
751 760Right-handed alpha
Helix 87
AJ8
C
766 774Right-handed alpha
Helix 88
AJ9
C
784 796Right-handed alpha
Helix 89
AK1
C
798 811Right-handed alpha
Helix 90
AK2
C
819 823Right-handed 310
Helix 91
AK3
C
842 844Right-handed 310
Helix 92
AK4
C
854 867Right-handed alpha
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There are 10 sheets in PDB entry 8JRP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
132 135anti-parallel
Strand 3
B
138 141anti-parallel
Strand 4
B
109 110parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 525first strand
Strand 2
A
554 557parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 591first strand
Strand 2
A
600 601anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 684first strand
Strand 2
A
692 695anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 777first strand
Strand 2
A
826 829parallel
Strand 3
A
846 849parallel
Strand 4
A
839 841anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 90first strand
Strand 2
D
132 135anti-parallel
Strand 3
D
138 141anti-parallel
Strand 4
D
109 110parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
522 525first strand
Strand 2
C
554 557parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
590 591first strand
Strand 2
C
600 601anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
681 684first strand
Strand 2
C
692 695anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
775 777first strand
Strand 2
C
826 829parallel
Strand 3
C
846 849parallel
Strand 4
C
839 841anti-parallel
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