Analysis of interatomic Contacts of Structural Units in PDB entry:
8JRQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JRQ entry

There are 4 chains in PDB entry 8JRQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 9SER 149
A
 ILE 120TYR 868
D
 PHE 9SER 149
C
 ILE 120TYR 868
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 8JRQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 23Right-handed alpha
Helix 2
AA2
B
45 55Right-handed alpha
Helix 3
AA3
B
70 85Right-handed alpha
Helix 4
AA4
B
92 99Right-handed alpha
Helix 5
AA5
B
102 106Right-handed 310
Helix 6
AA6
B
120 128Right-handed alpha
Helix 7
AA7
B
144 148Right-handed 310
Helix 8
AA8
A
129 141Right-handed alpha
Helix 9
AA9
A
148 156Right-handed alpha
Helix 10
AB1
A
160 166Right-handed alpha
Helix 11
AB2
A
235 243Right-handed alpha
Helix 12
AB3
A
251 273Right-handed alpha
Helix 13
AB4
A
275 280Right-handed alpha
Helix 14
AB5
A
284 292Right-handed alpha
Helix 15
AB6
A
293 303Right-handed 310
Helix 16
AB7
A
304 315Right-handed alpha
Helix 17
AB8
A
317 328Right-handed alpha
Helix 18
AB9
A
329 331Right-handed 310
Helix 19
AC1
A
332 354Right-handed alpha
Helix 20
AC2
A
365 386Right-handed alpha
Helix 21
AC3
A
403 413Right-handed alpha
Helix 22
AC4
A
426 433Right-handed alpha
Helix 23
AC5
A
435 439Right-handed 310
Helix 24
AC6
A
445 449Right-handed 310
Helix 25
AC7
A
459 469Right-handed alpha
Helix 26
AC8
A
476 484Right-handed 310
Helix 27
AC9
A
488 514Right-handed alpha
Helix 28
AD1
A
531 546Right-handed alpha
Helix 29
AD2
A
547 553Right-handed 310
Helix 30
AD3
A
571 583Right-handed alpha
Helix 31
AD4
A
608 625Right-handed alpha
Helix 32
AD5
A
634 643Right-handed alpha
Helix 33
AD6
A
650 655Right-handed alpha
Helix 34
AD7
A
655 667Right-handed alpha
Helix 35
AD8
A
709 723Right-handed alpha
Helix 36
AD9
A
726 742Right-handed alpha
Helix 37
AE1
A
745 750Right-handed alpha
Helix 38
AE2
A
751 760Right-handed alpha
Helix 39
AE3
A
767 773Right-handed alpha
Helix 40
AE4
A
784 797Right-handed alpha
Helix 41
AE5
A
798 810Right-handed alpha
Helix 42
AE6
A
858 867Right-handed alpha
Helix 43
AE7
D
18 23Right-handed alpha
Helix 44
AE8
D
45 55Right-handed alpha
Helix 45
AE9
D
70 85Right-handed alpha
Helix 46
AF1
D
92 99Right-handed alpha
Helix 47
AF2
D
102 106Right-handed 310
Helix 48
AF3
D
120 128Right-handed alpha
Helix 49
AF4
D
144 148Right-handed 310
Helix 50
AF5
C
129 141Right-handed alpha
Helix 51
AF6
C
148 156Right-handed alpha
Helix 52
AF7
C
160 166Right-handed alpha
Helix 53
AF8
C
235 243Right-handed alpha
Helix 54
AF9
C
251 273Right-handed alpha
Helix 55
AG1
C
275 280Right-handed alpha
Helix 56
AG2
C
284 292Right-handed alpha
Helix 57
AG3
C
293 303Right-handed 310
Helix 58
AG4
C
304 315Right-handed alpha
Helix 59
AG5
C
317 328Right-handed alpha
Helix 60
AG6
C
329 331Right-handed 310
Helix 61
AG7
C
332 354Right-handed alpha
Helix 62
AG8
C
365 386Right-handed alpha
Helix 63
AG9
C
403 413Right-handed alpha
Helix 64
AH1
C
426 433Right-handed alpha
Helix 65
AH2
C
435 439Right-handed 310
Helix 66
AH3
C
445 449Right-handed 310
Helix 67
AH4
C
459 469Right-handed alpha
Helix 68
AH5
C
476 484Right-handed 310
Helix 69
AH6
C
488 514Right-handed alpha
Helix 70
AH7
C
531 546Right-handed alpha
Helix 71
AH8
C
547 553Right-handed 310
Helix 72
AH9
C
571 583Right-handed alpha
Helix 73
AI1
C
608 625Right-handed alpha
Helix 74
AI2
C
634 643Right-handed alpha
Helix 75
AI3
C
650 655Right-handed alpha
Helix 76
AI4
C
655 667Right-handed alpha
Helix 77
AI5
C
709 723Right-handed alpha
Helix 78
AI6
C
726 742Right-handed alpha
Helix 79
AI7
C
745 750Right-handed alpha
Helix 80
AI8
C
751 760Right-handed alpha
Helix 81
AI9
C
767 773Right-handed alpha
Helix 82
AJ1
C
784 797Right-handed alpha
Helix 83
AJ2
C
798 810Right-handed alpha
Helix 84
AJ3
C
858 867Right-handed alpha
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There are 12 sheets in PDB entry 8JRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
66 67anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
133 135anti-parallel
Strand 3
B
138 141anti-parallel
Strand 4
B
109 110parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 527first strand
Strand 2
A
555 559parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 593first strand
Strand 2
A
598 601anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 685first strand
Strand 2
A
691 695anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
828 829first strand
Strand 2
A
848 849parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 61first strand
Strand 2
D
66 67anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 88first strand
Strand 2
D
133 135anti-parallel
Strand 3
D
138 141anti-parallel
Strand 4
D
109 110parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
523 527first strand
Strand 2
C
555 559parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
590 593first strand
Strand 2
C
598 601anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
681 685first strand
Strand 2
C
691 695anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
828 829first strand
Strand 2
C
848 849parallel
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