Analysis of interatomic Contacts of Structural Units in PDB entry:
8JRR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JRR entry

There are 4 chains in PDB entry 8JRR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 125ALA 869
B
 PRO 12CYS 146
C
 VAL 125ALA 869
D
 PRO 12PRO 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 8JRR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA2
A
132 134Right-handed 310
Helix 2
AA3
A
135 140Right-handed alpha
Helix 3
AA4
A
146 152Right-handed alpha
Helix 4
AA5
A
152 157Right-handed alpha
Helix 5
AA6
A
162 167Right-handed alpha
Helix 6
AA7
A
235 246Right-handed alpha
Helix 7
AA8
A
251 259Right-handed alpha
Helix 8
AA9
A
259 270Right-handed alpha
Helix 9
AB1
A
275 279Right-handed 310
Helix 10
AB2
A
283 286Right-handed 310
Helix 11
AB3
A
287 292Right-handed alpha
Helix 12
AB4
A
298 315Right-handed alpha
Helix 13
AB5
A
317 330Right-handed alpha
Helix 14
AB6
A
332 343Right-handed alpha
Helix 15
AB7
A
343 354Right-handed alpha
Helix 16
AB8
A
370 385Right-handed alpha
Helix 17
AB9
A
403 410Right-handed alpha
Helix 18
AC1
A
426 431Right-handed alpha
Helix 19
AC2
A
451 458Right-handed alpha
Helix 20
AC3
A
485 506Right-handed alpha
Helix 21
AC4
A
508 513Right-handed alpha
Helix 22
AC5
A
531 546Right-handed alpha
Helix 23
AC6
A
573 582Right-handed alpha
Helix 24
AC7
A
607 610Right-handed 310
Helix 25
AC8
A
611 623Right-handed alpha
Helix 26
AC9
A
634 642Right-handed alpha
Helix 27
AD1
A
650 655Right-handed alpha
Helix 28
AD2
A
655 668Right-handed alpha
Helix 29
AD3
A
709 723Right-handed alpha
Helix 30
AD4
A
728 742Right-handed alpha
Helix 31
AD5
A
745 750Right-handed alpha
Helix 32
AD6
A
751 760Right-handed alpha
Helix 33
AD7
A
766 771Right-handed alpha
Helix 34
AD8
A
786 795Right-handed alpha
Helix 35
AD9
A
854 868Right-handed alpha
Helix 36
AE1
B
18 26Right-handed alpha
Helix 37
AE2
B
46 51Right-handed alpha
Helix 38
AE3
B
70 83Right-handed alpha
Helix 39
AE4
B
92 96Right-handed alpha
Helix 40
AE5
B
119 121Right-handed 310
Helix 41
AE6
B
122 127Right-handed alpha
Helix 42
AE8
C
132 134Right-handed 310
Helix 43
AE9
C
135 140Right-handed alpha
Helix 44
AF1
C
146 152Right-handed alpha
Helix 45
AF2
C
152 157Right-handed alpha
Helix 46
AF3
C
162 167Right-handed alpha
Helix 47
AF4
C
235 246Right-handed alpha
Helix 48
AF5
C
251 259Right-handed alpha
Helix 49
AF6
C
259 270Right-handed alpha
Helix 50
AF7
C
275 279Right-handed 310
Helix 51
AF8
C
283 286Right-handed 310
Helix 52
AF9
C
287 292Right-handed alpha
Helix 53
AG1
C
298 315Right-handed alpha
Helix 54
AG2
C
317 330Right-handed alpha
Helix 55
AG3
C
332 343Right-handed alpha
Helix 56
AG4
C
343 354Right-handed alpha
Helix 57
AG5
C
370 385Right-handed alpha
Helix 58
AG6
C
403 410Right-handed alpha
Helix 59
AG7
C
426 431Right-handed alpha
Helix 60
AG8
C
451 458Right-handed alpha
Helix 61
AG9
C
485 506Right-handed alpha
Helix 62
AH1
C
508 513Right-handed alpha
Helix 63
AH2
C
531 546Right-handed alpha
Helix 64
AH3
C
573 582Right-handed alpha
Helix 65
AH4
C
607 610Right-handed 310
Helix 66
AH5
C
611 623Right-handed alpha
Helix 67
AH6
C
634 642Right-handed alpha
Helix 68
AH7
C
650 655Right-handed alpha
Helix 69
AH8
C
655 668Right-handed alpha
Helix 70
AH9
C
709 723Right-handed alpha
Helix 71
AI1
C
728 742Right-handed alpha
Helix 72
AI2
C
745 750Right-handed alpha
Helix 73
AI3
C
751 760Right-handed alpha
Helix 74
AI4
C
766 771Right-handed alpha
Helix 75
AI5
C
786 795Right-handed alpha
Helix 76
AI6
C
854 868Right-handed alpha
Helix 77
AI7
D
18 26Right-handed alpha
Helix 78
AI8
D
46 51Right-handed alpha
Helix 79
AI9
D
70 83Right-handed alpha
Helix 80
AJ1
D
92 96Right-handed alpha
Helix 81
AJ2
D
119 121Right-handed 310
Helix 82
AJ3
D
122 127Right-handed alpha
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There are 10 sheets in PDB entry 8JRR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 526first strand
Strand 2
A
555 558parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 593first strand
Strand 2
A
598 601anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 684first strand
Strand 2
A
692 694anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
65 67anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 91first strand
Strand 2
B
131 135anti-parallel
Strand 3
B
138 140anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
523 526first strand
Strand 2
C
555 558parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
590 593first strand
Strand 2
C
598 601anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
682 684first strand
Strand 2
C
692 694anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 62first strand
Strand 2
D
65 67anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 91first strand
Strand 2
D
131 135anti-parallel
Strand 3
D
138 140anti-parallel
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