Analysis of interatomic Contacts of Structural Units in PDB entry:
8JRU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JRU entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 8JRU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	SER 139	GLU 1356
R	CYS 1358	THR 1359
R	ALA 1361	ALA 1361
R	LEU 1365	LYS 1367
A	THR 6	HIS 368
H	VAL 5	VAL 121
L	SER 1	ILE 107
B	GLN 1	SER 113

There are 17 helices in PDB entry 8JRU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	139	165	Right-handed alpha
Helix 2	AA2	R	171	201	Right-handed alpha
Helix 3	AA3	R	221	254	Right-handed alpha
Helix 4	AA4	R	261	273	Right-handed alpha
Helix 5	AA5	R	273	285	Right-handed alpha
Helix 6	AA6	R	300	304	Right-handed 310
Helix 7	AA7	R	307	335	Right-handed alpha
Helix 8	AA8	R	343	367	Right-handed alpha
Helix 9	AA9	R	381	385	Right-handed alpha
Helix 10	AB1	R	385	391	Right-handed alpha
Helix 11	AB2	R	391	401	Right-handed alpha
Helix 12	AB3	R	404	424	Right-handed alpha
Helix 13	AB4	A	47	51	Right-handed 310
Helix 14	AB5	A	98	109	Right-handed alpha
Helix 15	AB6	A	159	161	Right-handed 310
Helix 16	AB7	L	80	84	Right-handed 310
Helix 17	AB8	B	61	64	Right-handed 310

There are 14 sheets in PDB entry 8JRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	1361	1364	first strand
Strand 2	A	7	10	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	40	43	anti-parallel
Strand 3	A	112	114	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	163	171	parallel
Strand 3	A	141	150	anti-parallel
Strand 4	A	53	63	anti-parallel
Strand 5	A	75	85	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	163	171	parallel
Strand 3	A	141	150	anti-parallel
Strand 4	A	127	129	anti-parallel
Strand 5	A	288	290	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	198	203	anti-parallel
Strand 3	A	214	222	anti-parallel
Strand 4	A	266	274	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	209	first strand
Strand 2	A	342	352	parallel
Strand 3	A	319	329	anti-parallel
Strand 4	A	228	240	anti-parallel
Strand 5	A	248	258	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	9	first strand
Strand 2	H	20	28	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	48	55	anti-parallel
Strand 3	H	37	42	anti-parallel
Strand 4	H	95	101	anti-parallel
Strand 5	H	117	119	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	66	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	20	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	111	112	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	57	59	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	108	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JRU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JRU