Analysis of interatomic Contacts of Structural Units in PDB entry:
8JRV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JRV entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 8JRV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	GLN 27	GLU 1356
R	CYS 1358	THR 1359
R	ALA 1361	ALA 1361
R	LEU 1365	LYS 1367
G	HIS 1	TRP 25
A	THR 6	GLU 369
H	VAL 5	VAL 121
L	SER 1	ILE 107
B	GLN 1	SER 113

There are 19 helices in PDB entry 8JRV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	27	47	Right-handed alpha
Helix 2	AA2	R	128	166	Right-handed alpha
Helix 3	AA3	R	167	170	Right-handed 310
Helix 4	AA4	R	171	207	Right-handed alpha
Helix 5	AA5	R	223	254	Right-handed alpha
Helix 6	AA6	R	263	272	Right-handed alpha
Helix 7	AA7	R	273	278	Right-handed alpha
Helix 8	AA8	R	279	288	Right-handed alpha
Helix 9	AA9	R	304	337	Right-handed alpha
Helix 10	AB1	R	342	367	Right-handed alpha
Helix 11	AB2	R	380	391	Right-handed alpha
Helix 12	AB3	R	391	402	Right-handed alpha
Helix 13	AB4	R	404	425	Right-handed alpha
Helix 14	AB5	G	2	25	Right-handed alpha
Helix 15	AB6	A	98	109	Right-handed alpha
Helix 16	AB7	H	90	94	Right-handed 310
Helix 17	AB8	L	80	84	Right-handed 310
Helix 18	AB9	B	61	64	Right-handed 310
Helix 19	AC1	B	73	75	Right-handed 310

There are 13 sheets in PDB entry 8JRV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	1360	1364	first strand
Strand 2	A	7	12	anti-parallel
Strand 3	A	18	22	anti-parallel
Strand 4	A	37	43	anti-parallel
Strand 5	A	113	117	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	164	171	parallel
Strand 3	A	142	150	anti-parallel
Strand 4	A	59	62	anti-parallel
Strand 5	A	76	80	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	164	171	parallel
Strand 3	A	142	150	anti-parallel
Strand 4	A	53	56	anti-parallel
Strand 5	A	83	85	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	288	290	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	188	first strand
Strand 2	A	197	203	anti-parallel
Strand 3	A	214	222	anti-parallel
Strand 4	A	266	274	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	342	351	parallel
Strand 3	A	319	329	anti-parallel
Strand 4	A	228	239	anti-parallel
Strand 5	A	252	258	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	10	first strand
Strand 2	H	20	26	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	72	76	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	48	55	anti-parallel
Strand 3	H	35	42	anti-parallel
Strand 4	H	95	103	anti-parallel
Strand 5	H	117	119	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	25	26	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	86	88	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	21	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	68	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	24	anti-parallel
Strand 3	B	77	81	anti-parallel
Strand 4	B	69	72	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	108	112	parallel
Strand 3	B	91	97	anti-parallel
Strand 4	B	34	38	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	58	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JRV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JRV