Analysis of interatomic Contacts of Structural Units in PDB entry:
8JS5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JS5 entry

There are 6 chains in PDB entry 8JS5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 25	VAL 274
B	ILE 22	VAL 274
C	GLU 23	VAL 274
D	PHE 25	VAL 274
E	PHE 25	VAL 274
F	VAL 27	ASP 33

There are 90 helices in PDB entry 8JS5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	50	Right-handed alpha
Helix 2	AA2	A	58	66	Right-handed alpha
Helix 3	AA3	A	67	82	Right-handed alpha
Helix 4	AA4	A	128	152	Right-handed alpha
Helix 5	AA5	A	169	177	Right-handed alpha
Helix 6	AA6	A	179	184	Right-handed alpha
Helix 7	AA7	A	187	192	Right-handed 310
Helix 8	AA8	A	195	211	Right-handed alpha
Helix 9	AA9	A	258	272	Right-handed alpha
Helix 10	AB1	B	42	49	Right-handed alpha
Helix 11	AB2	B	58	66	Right-handed alpha
Helix 12	AB3	B	69	83	Right-handed alpha
Helix 13	AB4	B	128	152	Right-handed alpha
Helix 14	AB5	B	169	177	Right-handed alpha
Helix 15	AB6	B	179	184	Right-handed alpha
Helix 16	AB7	B	187	192	Right-handed 310
Helix 17	AB8	B	195	211	Right-handed alpha
Helix 18	AB9	B	256	274	Right-handed alpha
Helix 19	AC1	C	42	49	Right-handed alpha
Helix 20	AC2	C	58	66	Right-handed alpha
Helix 21	AC3	C	69	83	Right-handed alpha
Helix 22	AC4	C	128	152	Right-handed alpha
Helix 23	AC5	C	169	177	Right-handed alpha
Helix 24	AC6	C	179	184	Right-handed alpha
Helix 25	AC7	C	187	192	Right-handed 310
Helix 26	AC8	C	195	211	Right-handed alpha
Helix 27	AC9	C	256	270	Right-handed alpha
Helix 28	AD1	D	42	49	Right-handed alpha
Helix 29	AD2	D	58	66	Right-handed alpha
Helix 30	AD3	D	69	81	Right-handed alpha
Helix 31	AD4	D	128	152	Right-handed alpha
Helix 32	AD5	D	169	177	Right-handed alpha
Helix 33	AD6	D	179	184	Right-handed alpha
Helix 34	AD7	D	187	192	Right-handed 310
Helix 35	AD8	D	195	211	Right-handed alpha
Helix 36	AD9	D	256	274	Right-handed alpha
Helix 37	AE1	E	42	50	Right-handed alpha
Helix 38	AE2	E	58	66	Right-handed alpha
Helix 39	AE3	E	70	83	Right-handed alpha
Helix 40	AE4	E	128	152	Right-handed alpha
Helix 41	AE5	E	169	177	Right-handed alpha
Helix 42	AE6	E	179	184	Right-handed alpha
Helix 43	AE7	E	187	192	Right-handed 310
Helix 44	AE8	E	195	211	Right-handed alpha
Helix 45	AE9	E	256	270	Right-handed alpha
Helix 46	AF1	F	42	49	Right-handed alpha
Helix 47	AF2	F	58	65	Right-handed alpha
Helix 48	AF3	F	67	83	Right-handed alpha
Helix 49	AF4	F	128	152	Right-handed alpha
Helix 50	AF5	F	169	177	Right-handed alpha
Helix 51	AF6	F	179	184	Right-handed alpha
Helix 52	AF7	F	187	192	Right-handed 310
Helix 53	AF8	F	195	211	Right-handed alpha
Helix 54	AF9	F	256	274	Right-handed alpha
Helix 55	AG1	G	42	49	Right-handed alpha
Helix 56	AG2	G	58	66	Right-handed alpha
Helix 57	AG3	G	69	85	Right-handed alpha
Helix 58	AG4	G	128	152	Right-handed alpha
Helix 59	AG5	G	169	177	Right-handed alpha
Helix 60	AG6	G	179	184	Right-handed alpha
Helix 61	AG7	G	187	192	Right-handed 310
Helix 62	AG8	G	195	211	Right-handed alpha
Helix 63	AG9	G	256	272	Right-handed alpha
Helix 64	AH1	H	42	50	Right-handed alpha
Helix 65	AH2	H	58	66	Right-handed alpha
Helix 66	AH3	H	67	84	Right-handed alpha
Helix 67	AH4	H	128	152	Right-handed alpha
Helix 68	AH5	H	169	177	Right-handed alpha
Helix 69	AH6	H	179	184	Right-handed alpha
Helix 70	AH7	H	187	192	Right-handed 310
Helix 71	AH8	H	195	211	Right-handed alpha
Helix 72	AH9	H	256	274	Right-handed alpha
Helix 73	AI1	I	42	49	Right-handed alpha
Helix 74	AI2	I	58	66	Right-handed alpha
Helix 75	AI3	I	67	83	Right-handed alpha
Helix 76	AI4	I	128	152	Right-handed alpha
Helix 77	AI5	I	169	177	Right-handed alpha
Helix 78	AI6	I	179	184	Right-handed alpha
Helix 79	AI7	I	187	192	Right-handed 310
Helix 80	AI8	I	195	211	Right-handed alpha
Helix 81	AI9	I	256	274	Right-handed alpha
Helix 82	AJ1	J	42	50	Right-handed alpha
Helix 83	AJ2	J	58	66	Right-handed alpha
Helix 84	AJ3	J	70	83	Right-handed alpha
Helix 85	AJ4	J	128	152	Right-handed alpha
Helix 86	AJ5	J	169	177	Right-handed alpha
Helix 87	AJ6	J	179	184	Right-handed alpha
Helix 88	AJ7	J	187	192	Right-handed 310
Helix 89	AJ8	J	195	211	Right-handed alpha
Helix 90	AJ9	J	256	272	Right-handed alpha

There are 21 sheets in PDB entry 8JS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	28	31	anti-parallel
Strand 3	A	118	127	anti-parallel
Strand 4	A	102	112	anti-parallel
Strand 5	A	87	94	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	168	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	246	255	anti-parallel
Strand 4	A	231	243	anti-parallel
Strand 5	A	220	225	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	28	32	anti-parallel
Strand 3	B	121	127	anti-parallel
Strand 4	B	100	109	anti-parallel
Strand 5	B	88	97	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	168	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	246	255	anti-parallel
Strand 4	B	231	243	anti-parallel
Strand 5	B	220	225	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	28	32	anti-parallel
Strand 3	C	121	127	anti-parallel
Strand 4	C	100	110	anti-parallel
Strand 5	C	88	97	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	168	first strand
Strand 2	C	155	160	anti-parallel
Strand 3	C	246	255	anti-parallel
Strand 4	C	231	243	anti-parallel
Strand 5	C	223	225	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	41	first strand
Strand 2	D	30	33	anti-parallel
Strand 3	D	118	127	anti-parallel
Strand 4	D	100	112	anti-parallel
Strand 5	D	88	97	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	168	first strand
Strand 2	D	155	160	anti-parallel
Strand 3	D	246	255	anti-parallel
Strand 4	D	231	243	anti-parallel
Strand 5	D	221	225	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	30	32	anti-parallel
Strand 3	E	121	127	anti-parallel
Strand 4	E	100	110	anti-parallel
Strand 5	E	88	97	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	168	first strand
Strand 2	E	155	159	anti-parallel
Strand 3	E	246	255	anti-parallel
Strand 4	E	231	243	anti-parallel
Strand 5	E	220	225	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	41	first strand
Strand 2	F	28	32	anti-parallel
Strand 3	F	121	127	anti-parallel
Strand 4	F	101	110	anti-parallel
Strand 5	F	88	95	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	168	first strand
Strand 2	F	155	159	anti-parallel
Strand 3	F	246	255	anti-parallel
Strand 4	F	231	243	anti-parallel
Strand 5	F	220	225	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	28	32	anti-parallel
Strand 3	G	121	127	anti-parallel
Strand 4	G	100	110	anti-parallel
Strand 5	G	88	97	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	168	first strand
Strand 2	G	155	160	anti-parallel
Strand 3	G	246	255	anti-parallel
Strand 4	G	231	243	anti-parallel
Strand 5	G	220	225	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	41	first strand
Strand 2	H	28	32	anti-parallel
Strand 3	H	121	127	anti-parallel
Strand 4	H	102	109	anti-parallel
Strand 5	H	88	94	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	168	first strand
Strand 2	H	155	160	anti-parallel
Strand 3	H	246	255	anti-parallel
Strand 4	H	231	243	anti-parallel
Strand 5	H	220	225	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	41	first strand
Strand 2	I	28	32	anti-parallel
Strand 3	I	121	127	anti-parallel
Strand 4	I	100	109	anti-parallel
Strand 5	I	88	97	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	165	168	first strand
Strand 2	I	155	159	anti-parallel
Strand 3	I	246	255	anti-parallel
Strand 4	I	231	243	anti-parallel
Strand 5	I	221	225	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	41	first strand
Strand 2	J	28	32	anti-parallel
Strand 3	J	121	127	anti-parallel
Strand 4	J	100	109	anti-parallel
Strand 5	J	87	97	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	165	168	first strand
Strand 2	J	155	159	anti-parallel
Strand 3	J	246	253	anti-parallel
Strand 4	J	237	243	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	222	225	first strand
Strand 2	J	231	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JS5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JS5