Analysis of interatomic Contacts of Structural Units in PDB entry:
8JS8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JS8 entry

There are 2 chains in PDB entry 8JS8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 137	GLN 742
B	THR 876	SER 1295

There are 27 helices in PDB entry 8JS8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	137	160	Right-handed alpha
Helix 2	AA2	A	162	183	Right-handed alpha
Helix 3	AA3	A	184	198	Right-handed alpha
Helix 4	AA4	A	203	230	Right-handed alpha
Helix 5	AA5	A	230	250	Right-handed alpha
Helix 6	AA6	A	255	271	Right-handed alpha
Helix 7	AA7	A	271	282	Right-handed alpha
Helix 8	AA8	A	283	284	Right-handed 310
Helix 9	AA9	A	285	288	Right-handed 310
Helix 10	AB1	A	289	295	Right-handed alpha
Helix 11	AB2	A	297	315	Right-handed alpha
Helix 12	AB3	A	331	352	Right-handed alpha
Helix 13	AB4	A	357	364	Right-handed alpha
Helix 14	AB5	A	367	386	Right-handed alpha
Helix 15	AB6	A	419	439	Right-handed alpha
Helix 16	AB7	A	444	483	Right-handed alpha
Helix 17	AB8	A	562	564	Right-handed 310
Helix 18	AB9	A	593	619	Right-handed alpha
Helix 19	AC1	A	623	641	Right-handed alpha
Helix 20	AC2	A	642	644	Right-handed 310
Helix 21	AC3	A	647	676	Right-handed alpha
Helix 22	AC4	A	681	706	Right-handed alpha
Helix 23	AC5	A	712	731	Right-handed alpha
Helix 24	AC6	B	929	933	Right-handed 310
Helix 25	AC7	B	954	958	Right-handed 310
Helix 26	AC8	B	1080	1092	Right-handed alpha
Helix 27	AC9	B	1265	1273	Right-handed alpha

There are 10 sheets in PDB entry 8JS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	492	first strand
Strand 2	A	500	512	parallel
Strand 3	A	515	527	parallel
Strand 4	A	530	532	first strand
Strand 5	A	550	552	parallel
Strand 6	A	570	572	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	567	first strand
Strand 2	A	545	547	parallel
Strand 3	A	515	527	parallel
Strand 4	A	500	512	parallel
Strand 5	A	535	542	first strand
Strand 6	A	555	559	parallel
Strand 7	A	574	577	parallel
Strand 8	B	1142	1144	anti-parallel
Strand 9	B	1150	1152	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	890	first strand
Strand 2	B	877	884	anti-parallel
Strand 3	B	1067	1075	anti-parallel
Strand 4	B	914	916	anti-parallel
Strand 5	B	905	906	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	890	first strand
Strand 2	B	877	884	anti-parallel
Strand 3	B	1067	1075	anti-parallel
Strand 4	B	941	948	anti-parallel
Strand 5	B	1015	1021	anti-parallel
Strand 6	B	1027	1031	anti-parallel
Strand 7	B	1034	1039	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	897	900	first strand
Strand 2	B	924	927	anti-parallel
Strand 3	B	1052	1055	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	962	968	first strand
Strand 2	B	973	979	anti-parallel
Strand 3	B	982	988	anti-parallel
Strand 4	B	994	1000	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1112	1115	first strand
Strand 2	B	1282	1285	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1122	1125	first strand
Strand 2	B	1134	1137	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1164	first strand
Strand 2	B	1179	1186	anti-parallel
Strand 3	B	1221	1226	anti-parallel
Strand 4	B	1232	1240	anti-parallel
Strand 5	B	1246	1255	anti-parallel
Strand 6	B	1258	1264	anti-parallel
Strand 7	B	1204	1205	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1164	first strand
Strand 2	B	1179	1186	anti-parallel
Strand 3	B	1189	1194	anti-parallel
Strand 4	B	1207	1209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JS8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JS8